rs244177769 SNP Detail

Summary

• ID
  rs244177769
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57764921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAAAAC CTCATTACTG
  AGAAGCGAGA AAGAGAGAAA AAGGAAGTGG TCAGAGTACC ACAGTCTCCT CCGTGTGCAC
  ACTTAGTGAC CCAAAGGCCT CCAGCAGCTG GGTCTCACCT TCAAAGGCGC CACTACCTTC
  CAATAGCAGC ACCCTGAGGA GCAAGCCTTT GCCACGGGGG GGGGGTGGGT GGGGGGGGGG
  T
  GACGGACGAC TTAAGTTACA AACTGTAGCA AGTAAGAGAT GTAGGGCCCA GCAGGCATGC
  TGCGGTGCTT CCAGGAGACA AGGAGGGCCT CAGCTGAGGC GGCAGAGTGG AAAGAGACAG
  GAACAAGGAT ACTGAAAAGG GAGGGCTGGC TGAGTAGCTG GCTGAGTAGC AGGAAGGGGT
  GAGGGGGCAT CAGGGGTGTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	C3H/HeH	C57BL/6J	C57BL/10J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
ss391194867	MGP_WTSI_14_58146301	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	C3H/HeH	C57BL/6J	C57BL/10J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	FVB/NJ	I/LnJ	JF1/MsJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	SWR/J
rs244177769					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391194867	MGP_WTSI_14_58146301	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57764921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6542	CpG island 6542	1411 bp distal
Il17d	interleukin 17D	within coordinates
Rr389707	regulatory region 389707	1947 bp upstream
Rr404129	regulatory region 404129	1674 bp downstream
Rr492826	regulatory region 492826	1922 bp proximal
Tssr128966	transcription start site region 128966	1997 bp upstream
Tssr128967	transcription start site region 128967	1939 bp upstream
Tssr128968	transcription start site region 128968	1819 bp upstream