rs244179653 SNP Detail

Summary

• ID
  rs244179653
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108691343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCCAATAC AAAAAGCAAC
  AGACTTAACG GAAAGAAGCT TTACACTTTA CGTGCTTGAG ATGACTTATG TCCCAGTTCC
  CTCGGACTAC CTCTTCAGTT GTGCAATAAA AGGCCCCAAG CATGGTTTTC TTGGACCTTA
  TGTCAGTTGG TTGCATCATG CCTGAGTGGA AGTCCTGCGA ATGCGAGTGG GGGTGGGGGG
  R
  AGGGTCCAGC GCTTCTCCAA AGTGCTTGCC TGCAAGACAC AGACGCGTGC ACAGCGAAAC
  GGGCTTACCG AGTCTCTTTG GAATCCCAAA CAGAAATCTA ACAATGAAAT GCTGTTGTCC
  AGTATTTTTA ACTTGTGCGA GGGGGCGGGA AATTCCAAGC CCTCTGTTGT GATAGGCTGA
  TCTCAAAGAT AATAATTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362789943	MGP_WTSI_4_108506751	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244179653					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362789943	MGP_WTSI_4_108506751	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108691343 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	532 bp upstream
Cpgi14564	CpG island 14564	7 bp distal
Cpgi14565	CpG island 14565	516 bp proximal
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	603 bp distal
Rr597225	regulatory region 597225	42 bp distal
Rr597226	regulatory region 597226	within coordinates
Tssr38313	transcription start site region 38313	464 bp upstream
Tssr38314	transcription start site region 38314	501 bp upstream
Tssr38315	transcription start site region 38315	563 bp upstream
Tssr38316	transcription start site region 38316	656 bp upstream
Tssr42738	transcription start site region 42738	549 bp upstream
Tssr42739	transcription start site region 42739	520 bp upstream
Tssr42740	transcription start site region 42740	93 bp downstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	532 bp upstream