rs244182721 SNP Detail

Summary

• ID
  rs244182721
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:28685168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAACTCAA TAAAATTAAC
  ACTCTCCCTG GGTGGCTGAG CAGTGGTAGT TCAGGGCACA GGACCCAGGT TCAGTTCCCA
  GCACTCACAA GCATTTGTAA TTCAAGTTTC AGGAACACGC AAGGTGCATG TACATTAACA
  GAAGCAAAAT ACTAACTTAC AAAAACGAAA CACCTGTCAA ACGCCAAACT CAGAAACACC
  M
  ACTGATCCTC AACCGAGTGG TACTGGGTCT AAACACTTCC AAAAAGTTAA GGTTAATGTC
  AGTGGGGAAA GAAAAAAAAA AAAAAAAAAG TCCAGCAATC AAGTGCAGAA GGCAGCACGG
  ACTTAAGCGT GAGACTGGCC TGCACTGGAA GTCCCTGTCT GCTGCCCTCC CGTCTCTTGC
  CCCGGGAATA GAGGCTGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385416014	MGP_WTSI_12_29320034	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244182721					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385416014	MGP_WTSI_12_29320034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:28685168 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4510	CpG island 4510	96 bp proximal
Gm53713	predicted gene, 53713	900 bp upstream
Rps7	ribosomal protein S7	Intron
Rr369505	regulatory region 369505	628 bp upstream
Rr464315	regulatory region 464315	678 bp proximal
Rr464316	regulatory region 464316	911 bp proximal
Tssr116014	transcription start site region 116014	64 bp downstream
Tssr116015	transcription start site region 116015	663 bp downstream
Tssr116016	transcription start site region 116016	674 bp downstream
Tssr116017	transcription start site region 116017	698 bp downstream
Tssr116018	transcription start site region 116018	722 bp downstream
Tssr116019	transcription start site region 116019	745 bp downstream