rs244191638 SNP Detail

Summary

• ID
  rs244191638
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30671997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGATGG CTCAGCAATT
  AAGAGCACTG ACTACTCTTC CAGAGGTCCT GAGTTTAATT CCCAGCAACC ACATGGTGGC
  TTACAACCAT CTGTAACAAG ATCTGGCGCC CTCTTCTGGT GTGTCTGAAG ACAGCTACAG
  TGTACTTACG TATAATAAAT CTTTAAAAAA AAAAAAAAAG AAAGGAAGGA AGGAAGGAAG
  R
  AAGAAAACCA AACAAAGTGG AACCTTAAAT AAATATTGAA TTCTAGTTAG TGATATTGCT
  AAAGATAAAC AAAAGCAAAC ATTTGCTAGA GCAGAGGGGG CAGACTGCTG TGTAGTAACT
  ATTGACAGTA GCAGGGAAAG TTGCGCTTCA TTCAACTGTG CAGAGGTAAC TGGGCCTTTT
  AAGACGAGAA TGAGGGCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390693723	MGP_WTSI_14_31763226	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244191638					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390693723	MGP_WTSI_14_31763226	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30671997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6278	CpG island 6278	1005 bp proximal
Gm41121	predicted gene, 41121	575 bp downstream
Nek4	NIMA (never in mitosis gene a)-related expressed kinase 4	1337 bp upstream
Rr404045	regulatory region 404045	1133 bp upstream
Rr489933	regulatory region 489933	694 bp proximal
Rr489934	regulatory region 489934	1233 bp proximal
Rr489935	regulatory region 489935	1392 bp proximal
Rr489936	regulatory region 489936	1715 bp proximal
Tssr124896	transcription start site region 124896	1366 bp upstream
Tssr124897	transcription start site region 124897	1391 bp upstream
Tssr124898	transcription start site region 124898	1412 bp upstream
Tssr124899	transcription start site region 124899	1447 bp upstream
Tssr124900	transcription start site region 124900	1491 bp upstream
Tssr127906	transcription start site region 127906	1215 bp downstream