rs244206599 SNP Detail

Summary

• ID
  rs244206599
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75119183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTTCGA AGTTGGTGAA
  GCTGCTTTGA AGTCATTAAA GTCACGCGCT GGTGTTTGTT TATCCGCTGA GGGGAGGGGA
  CTGGAGGCGA AGAGGGTTGA GTAATGGGGA TGGCACCGCC CTTCCCGATC CCAAGCAGAT
  TGTAGTCAAG ATCCTGGGGG CCTGAAAGCC CACTCACTGC CTCTGGGCAG TGCCTCACGC
  R
  ACAAAGAGGT CTCCAGCCGC CCTGTAAACA CCGGGAGAAG ACCTCAGGCC TCGCAGCCTC
  AACGCCCGCC CCGGATCACC CCTCCAGCAC CCTGGAAGCA CACCTTCGTG GGTGCAGGAT
  CACGACAGCG GCCAACGCGC ACGCGCGGGC GTCCCATCCG GGCTGTTAGG GCACGTCACG
  TGGCATCGCG CTTCATCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135780	MGP_WTSI_1_75139113	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244206599					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135780	MGP_WTSI_1_75139113	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75119183 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	within coordinates
Cpgi410	CpG island 410	472 bp distal
Cpgi411	CpG island 411	within coordinates
Gm57175	predicted gene, 57175	300 bp downstream
Retreg2	reticulophagy regulator family member 2	249 bp upstream
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	834 bp downstream
Tssr7485	transcription start site region 7485	741 bp downstream
Tssr7486	transcription start site region 7486	56 bp downstream
Tssr7487	transcription start site region 7487	20 bp downstream
Tssr7488	transcription start site region 7488	179 bp upstream
Tssr7489	transcription start site region 7489	223 bp upstream
Tssr7490	transcription start site region 7490	236 bp upstream
Tssr7491	transcription start site region 7491	274 bp upstream
Tssr7492	transcription start site region 7492	289 bp upstream
Tssr7493	transcription start site region 7493	704 bp upstream
Tssr12350	transcription start site region 12350	1024 bp upstream
Tssr12351	transcription start site region 12351	1009 bp upstream
Tssr12352	transcription start site region 12352	995 bp upstream
Tssr12353	transcription start site region 12353	933 bp upstream
Tssr12354	transcription start site region 12354	891 bp upstream
Tssr12355	transcription start site region 12355	796 bp upstream
Tssr12356	transcription start site region 12356	736 bp upstream
Tssr12357	transcription start site region 12357	185 bp upstream
Tssr12358	transcription start site region 12358	115 bp upstream
Tssr12359	transcription start site region 12359	95 bp downstream