rs244217841 SNP Detail

Summary

• ID
  rs244217841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91032942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTCTAAGC CAAGGCTTAC ACTAAACTAC
  ACACCCAAGA GCAGAAAGTT AGGCTCTGTA CTTCCCCACA CCTTGCCCCA GTTTTGCACC
  AGCCGAGGCT CTGGGATCAT TTTCAGAAGC ATTCCTCAAA GCAGGCACTC GCTCTCCAGG
  Y
  CCAGACCCCA ACCAGGGCAA GCACCAGCTT TGTAGAAGAA GGGGTAAGCC TGACCTAGCG
  CCTCTACAAA AGCGAGGTGT TTAAGCCTTT TCTGCCCGGA AGGTCGCGCA ACAGTCCCAC
  CCTCGTTCAT CACCGCCAAT CGCAAACCTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391967	CHEV_2_91042754	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244217841					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91032942 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	288 bp upstream
Cpgi11901	CpG island 11901	within coordinates
Gm13783	predicted gene 13783	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367226	regulatory region 367226	124 bp upstream
Rr560670	regulatory region 560670	within coordinates
Rr560671	regulatory region 560671	171 bp proximal
Rr560672	regulatory region 560672	219 bp proximal
Tssr18869	transcription start site region 18869	195 bp upstream
Tssr18870	transcription start site region 18870	306 bp upstream
Tssr18871	transcription start site region 18871	661 bp upstream
Tssr25175	transcription start site region 25175	46 bp downstream