rs244220416 SNP Detail

Summary

• ID
  rs244220416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41639027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATGGCTGC CCCCATGACA
  GACAGCACCC TCAGGCCAGC GCAGACAGTG GAGCTGCCTC AGCGGCAAGG CCCATGCCGA
  GGCACAACTC TGGGGTGGCC AACCATCCAA GGTGGCTGTC CTGTCCACAC ACAGCGACTT
  CTTGGCAGGG AAGATGCCCA CCTGCAGTCC TGGGCCTGAG GAAGTACAGA GGAAAGTAGA
  Y
  GGAGGTGAGG AGGAAGAAGT GGGCTGAAGC CTAGGGGGAC AGCTTCCATC TTTGGCCTCA
  GGCAGAGAGC AGTGAGTCCC AGCAGTCTCA GGTACCCCAC AAAGCCAGCA CCTCCGCCCT
  CAGGCCTGGC TCTGAGCCCC TGGGTGCTGT GGTGCAGCCA GAGTGGGGAA GCTATAGTAG
  GCAGGCAGCC TCTTTCTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361304350	MGP_WTSI_4_41586060	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244220416					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361304350	MGP_WTSI_4_41586060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41639027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14161	CpG island 14161	474 bp proximal
Dnai1	dynein axonemal intermediate chain 1	869 bp downstream
Enho	energy homeostasis associated	within coordinates
Gm12406	predicted gene 12406	within coordinates
Tssr36884	transcription start site region 36884	331 bp upstream
Tssr41357	transcription start site region 41357	942 bp downstream
Tssr41358	transcription start site region 41358	1073 bp downstream
Tssr41359	transcription start site region 41359	1151 bp downstream
Tssr41360	transcription start site region 41360	1215 bp downstream
Tssr41361	transcription start site region 41361	1269 bp downstream
Tssr41362	transcription start site region 41362	1295 bp downstream
Tssr41363	transcription start site region 41363	1326 bp downstream
Tssr41364	transcription start site region 41364	1338 bp downstream
Tssr41365	transcription start site region 41365	1355 bp downstream