rs244226725 SNP Detail

Summary

• ID
  rs244226725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72221292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGTATCTC AGGACTGGAA AACTGGGAAA
  ATCGAACAAC TGTTTTGTGT ATCTCTGCCT CCATCTCCTC CAAAAGCAAG TACTCAATAA
  ACATATGAAg aagaaaggaa ggaaggaagg aaggaaggaa ggagggaggg agggagggag
  R
  gagggaggga gggagggaga gaaggaagga ggaaggcagg aagCTGGGTG GCAGGCAATC
  AGAGAGCATG ACTGTAGTGA TGTAAACACT ACTCTTGCCC TGGAAGATAA ATATGTACCC
  AGTGCATTTG CCTAGCCATT GTGCTTCATG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342260	CHEV_2_72229005	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244226725					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72221292 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558965	regulatory region 558965			117 bp distal
Rr558966	regulatory region 558966			758 bp distal
Rr558967	regulatory region 558967			11 bp proximal
Rr558968	regulatory region 558968			1469 bp proximal
Tssr18338	transcription start site region 18338			543 bp downstream
Tssr18339	transcription start site region 18339			209 bp downstream
Tssr18340	transcription start site region 18340			193 bp downstream
Tssr18341	transcription start site region 18341			176 bp downstream