rs244241593 SNP Detail

Summary

• ID
  rs244241593
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25014080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTGAACG TAGGTATGAG
  AATTTTAATT AGTTACTCAA AGGCAATCAA ACCAATGTCA AAATTACCTC ACAAAAAAAC
  AGTCAGATGC TGTGGCACAT ACTATTCATC CCAATACTCA AGTAGCAGAG GCTGATCAAT
  CTCTGTGAGA TCCAGGATGA CCTGGTCTAC ATGTCAAGTT CTGGATAGAA CTTAAATAAA
  W
  AATAGAAAAT AAATAAATAA ATAAAACCAA ATAAATACGT TACAAAATAT TCTAATACCC
  AGGAGGGTGA GGAAAGCTTA CGGAGAAGTG GCTATGGAAC CCTGTCAACG ACAGGTGCCC
  ACCTGCAACC CTGTCAATGA CGGGCTCCCA CCTGCAAGCT TGGATTAACT ACATCCCAGT
  CCTCATAAAG TTGTTTTTGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss388016912	MGP_WTSI_13_24921966	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs244241593					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388016912	MGP_WTSI_13_24921966	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25014080 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	within coordinates
Cpgi5387	CpG island 5387	1014 bp proximal
Rr281160	regulatory region 281160	320 bp proximal
Rr403682	regulatory region 403682	1349 bp upstream
Tdp2	tyrosyl-DNA phosphodiesterase 2	1582 bp upstream
Tssr118970	transcription start site region 118970	1564 bp upstream
Tssr118971	transcription start site region 118971	1603 bp upstream
Tssr121812	transcription start site region 121812	1225 bp downstream
Tssr121813	transcription start site region 121813	1240 bp downstream
Tssr121814	transcription start site region 121814	1256 bp downstream
Tssr121815	transcription start site region 121815	1312 bp downstream
Tssr121816	transcription start site region 121816	1491 bp downstream