rs244242178 SNP Detail

Summary

• ID
  rs244242178
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:68394297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCCTCTAT CAACTTTCCC
  ACTTCTTTGC CCCATTATGA CAACCTACCC TCAGACTTGC CAACTTTAGA TGCCCCAGTA
  CAGGGGAACG CCAGGGCCAA AAAGGGGAAG TGGGTGGGTA GGGGATGGGG GTGGGTGGGT
  ATGGGAGACC TTTGGGATAG CATTGAAAAT GTAAACGAGG AAAATAACTA ATAAAAAAAT
  W
  AAAAAAAAAA AGAAAATAAA GCATTGCAAA CAAATGATCA AACAAAAAAA AAACCACCCA
  CAAAATCAAA GTCTTAAGGA ATTGTTTCTC TCTGAGGACA TGAGTGTGAT GTCAGTCCAA
  AGACAACTTC AGTTGCCAAG ACGTAAGTTA GGACAAGTGG GGACCGAGTG CTTTAAAGAA
  AGGATATTGA ACGTGGACAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
ss354348869	MGP_WTSI_2_68402010	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ
rs244242178					SNP	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354348869	MGP_WTSI_2_68402010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:68394297 () rs orientation: forward

Symbol	Name	Function Class
Gm49462	predicted gene, 49462	within coordinates
Gm74865	predicted gene, 74865	523 bp upstream
Gm74875	predicted gene, 74875	437 bp downstream
Rr44205	regulatory region 44205	97 bp distal
Rr64245	regulatory region 64245	314 bp distal
Tssr18024	transcription start site region 18024	1704 bp upstream
Tssr24417	transcription start site region 24417	1422 bp downstream
Tssr24418	transcription start site region 24418	1441 bp downstream
Tssr24419	transcription start site region 24419	1450 bp downstream