rs244248644 SNP Detail

Summary

• ID
  rs244248644
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122639891 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGACCCC GAAGTGGCCC
  AGCACCTCCT CCACGGTCTT TGTGTGAGCG TTCTCCATGG CTGCGGGGGC CCCGGCCGGC
  CTCGCCTCGC GTCCCCGCGG CCTCCTCGCC TACCGCCTCG CACTCCGGCC GCGGGCTCGT
  GCCACCGCGG GCGCCCGGGC GCGGACAGCT GTCCCCTCCT TTTTCTTCTC CTCCTCCTCC
  T
  CCGCGGCGGC GGCGGCCGCT TCCGCCTGAC CGGGGCGCTG AATCACCCGA GCCCCCTCCC
  CCAGAAACCG CCGCACGCGG CCCGGCCTCG CCGAGCCCGC CCGAGGGACT GCGAGCCTCC
  CGCCCCGCCG CGAGTGTGGG TCGCTTCAGC AGCTGCCAGC CGGCCGCGGG CAGCGCAGGC
  CCCGGGCGCT GCGCCGAGGA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366519163	MGP_WTSI_5_122951837	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244248644					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519163	MGP_WTSI_5_122951837	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122639891 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	980 bp downstream
Gm57291	predicted gene, 57291	617 bp upstream
Rr378565	regulatory region 378565	1924 bp upstream
Rr399329	regulatory region 399329	1625 bp upstream
Rr619900	regulatory region 619900	1252 bp distal
Rr619901	regulatory region 619901	326 bp distal
Rr619902	regulatory region 619902	57 bp proximal
Rr619903	regulatory region 619903	350 bp proximal
Rr619904	regulatory region 619904	656 bp proximal
Tssr1626	transcription start site region 1626	897 bp downstream
Tssr48697	transcription start site region 48697	1093 bp downstream
Tssr48698	transcription start site region 48698	215 bp downstream
Tssr48699	transcription start site region 48699	93 bp downstream
Tssr48700	transcription start site region 48700	18 bp downstream
Tssr48701	transcription start site region 48701	638 bp upstream
Tssr53124	transcription start site region 53124	1487 bp upstream
Tssr53125	transcription start site region 53125	1453 bp upstream
Tssr53126	transcription start site region 53126	995 bp upstream
Tssr53127	transcription start site region 53127	605 bp upstream
Tssr53128	transcription start site region 53128	563 bp upstream
Tssr53129	transcription start site region 53129	547 bp upstream
Tssr53130	transcription start site region 53130	40 bp upstream
Tssr53131	transcription start site region 53131	308 bp downstream
Tssr53132	transcription start site region 53132	334 bp downstream
Tssr53133	transcription start site region 53133	364 bp downstream
Tssr53134	transcription start site region 53134	439 bp downstream
Tssr53135	transcription start site region 53135	455 bp downstream
Tssr53136	transcription start site region 53136	799 bp downstream
Tssr53137	transcription start site region 53137	903 bp downstream