rs244254378 SNP Detail

Summary

• ID
  rs244254378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149724094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACTACAT TGGCTTATGA
  CTCCAAAGTC CTAATGACTG GACACCATTT AAGTATGCCA TCACTCTATC ACTGAATATG
  CTATGTAACA CAGACGTGTC ATTGACATGT ATAAAAGTGT CACATAAAAT GTCACCTGAC
  CAGAACACTT TAGAAAGGAT GCTATTTGTA ACACATGATA TATGTCCTTG CAACAACATC
  Y
  TTCATAATAA ATTACAAAGT ATCCACTTTC TTTTTTTCCT CTTGATTTAT TTTATTACTC
  TTTCAATGTA TGTGTGTATG TATGTGGGTA TTTGCACATG AGTGCAGGTG CCTCATCTGA
  GGCCACAAGG GGGTGTTGGA TCTCCTGAAG CTGTAGTTAC AGGCAGTTGT GAGCCACCCA
  ATGTGGGTAC TGGGAACTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321721679	CHEV_5_150603204	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244254378					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149724094 () rs orientation: forward

Symbol	Name	Function Class
Gm21221	predicted gene, 21221	1361 bp downstream
Gm71685	predicted gene, 71685	1570 bp upstream
Tssr54654	transcription start site region 54654	1919 bp downstream