rs244256665 SNP Detail

Summary

• ID
  rs244256665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:133695935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTGCATCCT TTTGAGTTGC
  CACCTTGGGG AGTCCCTCGG TGTGCTCACC TGGAAAGCAG TCCACGGGAT GTGGAGGTGT
  GGGCTGGGAG GGGAGACTTT CCACACAGGG ATGCCTTTCG GGTACAGCGG GGCAGGTAGG
  AGCTGTCCTT TCAGCACCTA CTGCTGAGCC GCCTCCCCAA CGTTAAACAG CCCCCCAACA
  Y
  CTGCCTGGTA GCTTCCTTAA ATCCCCTCTG GCCCCTGTCA CAGAATGGTG GAGAAAAGCC
  GGCGCCCCAG CCCGGGAGCA CGCCCCTCCC ACTCGGCTCT CTGGGTCTGG GCTGCAGCTA
  CCCAGCTGCC CCCACTCAGC AGAGGCCATG GAACCTGGGC TTTGCAGATG CCACAGCTGG
  CTAAAGCCCG CCTCACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363328442	MGP_WTSI_4_133524539	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244256665					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363328442	MGP_WTSI_4_133524539	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:133695935 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15020	CpG island 15020			within coordinates
Dhdds	dehydrodolichyl diphosphate synthase			404 bp downstream
Hmgn2	high mobility group nucleosomal binding domain 2			mRNA-UTR
				Noncoding-Transcript-Variant
Rr398563	regulatory region 398563			1192 bp downstream
Rr601512	regulatory region 601512			133 bp distal
Rr601513	regulatory region 601513			16 bp proximal
Tssr39509	transcription start site region 39509			471 bp downstream
Tssr43836	transcription start site region 43836			1397 bp upstream
Tssr43837	transcription start site region 43837			1340 bp upstream
Tssr43838	transcription start site region 43838			1316 bp upstream
Tssr43839	transcription start site region 43839			673 bp upstream
Tssr43840	transcription start site region 43840			619 bp upstream
Tssr43841	transcription start site region 43841			498 bp upstream
Tssr43842	transcription start site region 43842			3 bp upstream