rs244265158 SNP Detail

Summary

• ID
  rs244265158
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAGAG GTATTCAGTC
  TACAGTATTA CATGGACAGA GATTTGGGGA ACACCGAGTA CAGCAACCTA ACGAGTTTCT
  TTCTGGAGAG TTTTCTAGGG TCTTTTCATG GTGTCACAGG AAGCAGCAAG TGGGACACAC
  AACCTGTGGT ATTATTCAAA CAGATTCAAC CACGATGCCA TTTTTCTCAA AGCATTTTGT
  R
  AAAATGGGGT TCTCGCCTGC AGACGTCAGC AGCCATCCGT GAACAGTGAG AGGAAGGTCC
  CTGTGGACCT GGACCTCGGG CCTAGAGCCA GAGCCCCACA GGCAGACACA CTGACTTCTG
  AACCAGACTT CTCGCTGGCG TCATGACTTT GGGAATATTG CTAATCCTCA GAGCCCCAGT
  GTTCTAAGGG CCTCCAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864901	CHEV_3_107044413	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244265158					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148811 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	371 bp upstream
Prok1	prokineticin 1	1788 bp upstream
Rr582947	regulatory region 582947	29 bp proximal
Rr582948	regulatory region 582948	382 bp proximal
Tssr31192	transcription start site region 31192	294 bp upstream
Tssr31193	transcription start site region 31193	365 bp upstream
Tssr31194	transcription start site region 31194	420 bp upstream