rs244269708 SNP Detail

Summary

• ID
  rs244269708
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:47922448 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTCAGGA AGAGCTTCGG
  GACCTATAGC AGGAGCCCCC AAATTCTCAG GTAATCTCAT TAGAAAGGTG GATGTCCAAG
  TCACCCTTTT CCAGAATTCA TGAAAGTAGC CTAGGGCGTC CTGTCAACCC GTTGGACGCC
  TTGGGGGCGG AGCCGAGTCG ATGACGTTCT AGAAATGTCA CCACTGGGTA CCAGAGATGG
  S
  GCTCCCTGTG GGCGTGTCGC CGCGGCGCTC AGTATTTGCG CATTTCCGGC GGTCGATCAA
  CGACTGCTTC CTGTGTTTAG GGGGCCGCCG TTCGCGTGAA GGTCTGGAGT CTCTGAGTTC
  GAGGGTTTGG AGGCGCCACC TTTTGATCCT TCGCTATGGG AGTGACGTGG TAGGACTTGA
  AGGGCTTCTG TGGTGACGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss398350554	MGP_WTSI_17_47748472	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244269708					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss398350554	MGP_WTSI_17_47748472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:47922448 () rs orientation: forward

Symbol	Name	Function Class
Bysl	bystin-like	31 bp upstream
Cpgi9265	CpG island 9265	within coordinates
Gm20517	predicted gene 20517	66 bp upstream
Med20	mediator complex subunit 20	62 bp upstream
Rr331712	regulatory region 331712	1448 bp distal
Rr339937	regulatory region 339937	within coordinates
Rr405326	regulatory region 405326	within coordinates
Tssr5145	transcription start site region 5145	272 bp upstream
Tssr144986	transcription start site region 144986	34 bp upstream
Tssr144987	transcription start site region 144987	47 bp upstream
Tssr144988	transcription start site region 144988	100 bp upstream
Tssr148446	transcription start site region 148446	345 bp upstream
Tssr148447	transcription start site region 148447	279 bp upstream
Tssr148448	transcription start site region 148448	89 bp upstream
Tssr148449	transcription start site region 148449	within coordinates