rs244274917 SNP Detail

Summary

• ID
  rs244274917
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:87841277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCACTA TTAAAACCAA
  TTGTTTTACA AACATGCTCT ATTGATTCTC TCCTTGGAGA CATATAAAGT CCTATTCAAT
  GCCACATCAG CTCATGAGAA ATTTGTTGCA GAATATATAA TCTTTCTTCA GTGCTGAGAG
  GTTTTATAGT TTAGAATCTC AGAGCTATAT TGTCTGCCCT GTAGAACCTC TAAATACCTG
  K
  ACTGGGTATC TTATTTTTGA CTCATGAATA AAAGAACAAT TTTAAAATTT ATGAGACCTA
  CAGTACACAT TGAAATGAAA ATTGACCTGT AACAAAAGCA AAAATATATC CACATAAAAT
  ATAGAAAAAC TTCATTTCTG CTTTTGTTCA CAGCATGATA ATATAGGATG TAAAGTTAAA
  TGCTTTTGGA AAGAGACAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365777264	MGP_WTSI_5_88122443	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244274917					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365777264	MGP_WTSI_5_88122443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:87841277 () rs orientation: forward

Symbol	Name	Function Class
Csn2	casein beta	within coordinates
D5Mit12	DNA segment, Chr 5, Massachusetts Institute of Technology 12	444 bp proximal
D5Mit16	DNA segment, Chr 5, Massachusetts Institute of Technology 16	450 bp proximal
D5Mit16.1	DNA segment, Chr 5, Massachusetts Institute of Technology 16.1	550 bp proximal
D5Mit16.2	DNA segment, Chr 5, Massachusetts Institute of Technology 16.2	248 bp proximal
Tssr1529	transcription start site region 1529	1136 bp upstream
Tssr46883	transcription start site region 46883	1083 bp upstream
Tssr46884	transcription start site region 46884	1096 bp upstream
Tssr46885	transcription start site region 46885	1124 bp upstream
Tssr46886	transcription start site region 46886	1152 bp upstream
Tssr46887	transcription start site region 46887	1169 bp upstream
Tssr46888	transcription start site region 46888	1238 bp upstream
Tssr46889	transcription start site region 46889	1287 bp upstream
Tssr46890	transcription start site region 46890	1302 bp upstream
Tssr46891	transcription start site region 46891	1346 bp upstream
Tssr46892	transcription start site region 46892	1350 bp upstream
Tssr46893	transcription start site region 46893	1378 bp upstream
Tssr46894	transcription start site region 46894	1425 bp upstream
Tssr46895	transcription start site region 46895	1448 bp upstream
Tssr46896	transcription start site region 46896	1543 bp upstream
Tssr51613	transcription start site region 51613	739 bp upstream
Tssr51614	transcription start site region 51614	676 bp upstream
Tssr51615	transcription start site region 51615	620 bp upstream
Tssr51616	transcription start site region 51616	586 bp upstream
Tssr51617	transcription start site region 51617	577 bp upstream
Tssr51618	transcription start site region 51618	1112 bp downstream
Tssr51619	transcription start site region 51619	1150 bp downstream
Tssr51620	transcription start site region 51620	1159 bp downstream
Tssr51621	transcription start site region 51621	1168 bp downstream
Tssr51622	transcription start site region 51622	1206 bp downstream
Tssr51623	transcription start site region 51623	1231 bp downstream
Tssr51624	transcription start site region 51624	1249 bp downstream
Tssr51625	transcription start site region 51625	1255 bp downstream
Tssr51626	transcription start site region 51626	1265 bp downstream
Tssr51627	transcription start site region 51627	1280 bp downstream
Tssr51628	transcription start site region 51628	1321 bp downstream
Tssr51629	transcription start site region 51629	1413 bp downstream
Tssr51630	transcription start site region 51630	1507 bp downstream
Tssr51631	transcription start site region 51631	1556 bp downstream
Tssr51632	transcription start site region 51632	1850 bp downstream