rs244286032 SNP Detail

Summary

• ID
  rs244286032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACTTCG CTGTATTCAA
  ACCAGAGAAC ACAGAGCAGG GCAGAAACAG GTCCAGACCC ATAATCAAAC GTTTACAGAA
  CACAGAATCA TTAATTAATG AAAAATGTTT AAACTGTACA GCATCCTTTT GTTCATCTGA
  AATTCAAAAC TAGGAAATCT AAGTTCTGTG TACTTAAGCC AATGTAGAGT ACATAACTCC
  Y
  CAAATCAATG GAATCTGTAG AAAGTTCTCG TTAAAAGTAT GGCTTCTTTT CTTATCTTTC
  TTCTTTCTTT CCTTTTTTCT TTCTTTCTTT TTTATTTTTG AGTCTAAAGT ATAACCAGTA
  TCCATGTACC TCAGGCATCG GTCCCTACAC CACCCACCGA ATCCCTGGAC ATGTCCACAT
  TAAAGCAACC TTATGACTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625302	CHEV_2_173405647	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244286032					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421939 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	1873 bp upstream
Cpgi12846	CpG island 12846	1331 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	867 bp downstream
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1053 bp downstream
Rr571986	regulatory region 571986	1315 bp distal
Tssr27995	transcription start site region 27995	1966 bp upstream
Tssr27996	transcription start site region 27996	1947 bp upstream
Tssr27997	transcription start site region 27997	1935 bp upstream
Tssr27998	transcription start site region 27998	1868 bp upstream
Tssr27999	transcription start site region 27999	1812 bp upstream