rs244288117 SNP Detail

Summary

• ID
  rs244288117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:65200069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGATAT GACTCAGCAT
  TTAAGAGCAC GTTGCTCTTG CAGAGGTACC AGGTTCCCAT CACCCACATG GTGATTCACA
  GCCATGATTA ACCCTAGGTC CAGGGGATTC AACAGGCACA CTTGTGATGC ACTCACATTC
  ATGCAGGCAA AATGTTCCTA TGCATGAAGC AAAGATTTTT AAAAAATGTG TGTGAAGCCG
  R
  GAGTGGTGGA ACACGCCTTT AATCCCAGCA CTTGGGAGGC AGAGGCAGGC GGATTTCTGA
  GTTCGAGGCC AGCCTGGTCT ACAGAGTGAG TTCTAGGACA GCCAGGGCTA CACAGAGAAA
  CCCTGTCTCG AAAAAACAAA AACAAAAAAA CCCATAACTT CTCTTTTTGG GCGGGAGAAG
  CCAGAGACAG CCCTCTTGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377861905	MGP_WTSI_9_65140594	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244288117					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377861905	MGP_WTSI_9_65140594	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:65200069 () rs orientation: forward

Symbol	Name	Function Class
Clpx	caseinolytic mitochondrial matrix peptidase chaperone subunit	1473 bp upstream
Cpgi21943	CpG island 21943	1208 bp proximal
Rr201316	regulatory region 201316	1869 bp distal
Rr206623	regulatory region 206623	131 bp proximal
Rr368805	regulatory region 368805	1192 bp upstream
Tssr85679	transcription start site region 85679	1370 bp upstream
Tssr85680	transcription start site region 85680	1392 bp upstream
Tssr85681	transcription start site region 85681	1488 bp upstream
Tssr85682	transcription start site region 85682	1583 bp upstream
Tssr85683	transcription start site region 85683	1608 bp upstream
Tssr85684	transcription start site region 85684	1640 bp upstream
Tssr85685	transcription start site region 85685	1653 bp upstream
Tssr85686	transcription start site region 85686	1770 bp upstream