rs244304216 SNP Detail

Summary

• ID
  rs244304216
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122642266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCAGGGG CTGGAGGTGC
  ACCCTACAAC ACGGGTTCCC AGTTTTTCCC TCAGGCCATC TTCCTCCTTG TCCGGTCCCC
  TCCTGAAAGA TGTTTGGTGG TTTTTTTTGT TTTGTTTTTC CAGAGCTGAG GACCGAACCC
  AGGGCCTTGA GCTTGCTAGG CAAGCTCTCT ACCACTGAGC TAAATCCCCG AGTCCCCCCC
  M
  CCCCCCGGAA AGATGCTTTA TTATCTAAAG CAGCTCCCCT CCCCAGGATG CCTACTATCA
  CATTATTCAA GGGTCTCTGC TGCCCTAGCA CTTTTCTATG GAAAATACAC TGTAGATTTT
  GTTTAGCTGC TCGGTGCCTG CCTCCTAGCA TCTTGTAAGG GCATCCAGAC TTGAGAATGA
  AGCTTGTCTG TCTGGTCCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss366519203	MGP_WTSI_5_122954212	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs244304216					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519203	MGP_WTSI_5_122954212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122642266 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	1978 bp upstream
Cpgi16553	CpG island 16553	1145 bp distal
Gm57291	predicted gene, 57291	601 bp downstream
Rr378565	regulatory region 378565	within coordinates
Rr399329	regulatory region 399329	450 bp downstream
Rr619902	regulatory region 619902	1720 bp distal
Rr619904	regulatory region 619904	246 bp distal
Tssr48701	transcription start site region 48701	1721 bp downstream
Tssr53133	transcription start site region 53133	1959 bp upstream
Tssr53134	transcription start site region 53134	1925 bp upstream
Tssr53135	transcription start site region 53135	1909 bp upstream
Tssr53136	transcription start site region 53136	1549 bp upstream
Tssr53137	transcription start site region 53137	1461 bp upstream