rs244309038 SNP Detail

Summary

• ID
  rs244309038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48045369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCGAGC GAACGCGCAG
  CCGGGAGAGC CGAGTCTCCT GCCTCCCGCC CCCCACCCCT CCAGCGCCTG CTCCTCCTCC
  GCTCCCCATA CACAGACACG CTCACACCCG CTCCTTCACT TGCACACACA GACAGACACA
  CGCGCGCTCA CACGCTCCGC ACACACACTC CACTCTCTCC CGCGCGCTCA CACCCCTCTC
  R
  CCCGGCTCCC TCGCCAGTGT CGCGCCGCGC CGCGCCGCAG CCGGACGCCC CTCCAGGGCT
  CACTTTGCAA CGCTGACAGA GCCCGCAGTG TCCGTGGAGG TGGGAAACGT GGCGACATCC
  TACCCCCTGG TCGCAGCCGG AGACTGGATG CCTGCGGAAC CTCTCGGCGG CGCTCTCCCA
  TGAGTTGGGA TCGCAGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss361430075	MGP_WTSI_4_48058241	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244309038					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361430075	MGP_WTSI_4_48058241	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48045369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14277	CpG island 14277	1560 bp distal
Cpgi14278	CpG island 14278	within coordinates
Cpgi14279	CpG island 14279	1918 bp proximal
Gm68858	predicted gene, 68858	1563 bp downstream
Gm69235	predicted gene, 69235	1141 bp downstream
Nr4a3	nuclear receptor subfamily 4, group A, member 3	within coordinates
Rr376438	regulatory region 376438	152 bp downstream
Rr591924	regulatory region 591924	1941 bp distal
Rr591926	regulatory region 591926	1707 bp distal
Rr591927	regulatory region 591927	206 bp distal
Rr591928	regulatory region 591928	within coordinates
Rr591929	regulatory region 591929	156 bp proximal
Rr591930	regulatory region 591930	1819 bp proximal
Tssr37181	transcription start site region 37181	1828 bp downstream
Tssr37182	transcription start site region 37182	1797 bp downstream
Tssr37183	transcription start site region 37183	1717 bp downstream
Tssr37184	transcription start site region 37184	1692 bp downstream
Tssr37185	transcription start site region 37185	1520 bp downstream
Tssr37186	transcription start site region 37186	1505 bp downstream
Tssr37187	transcription start site region 37187	245 bp downstream
Tssr37188	transcription start site region 37188	209 bp downstream
Tssr37189	transcription start site region 37189	179 bp downstream
Tssr37190	transcription start site region 37190	131 bp downstream
Tssr37191	transcription start site region 37191	62 bp downstream
Tssr37192	transcription start site region 37192	36 bp downstream
Tssr37193	transcription start site region 37193	11 bp upstream
Tssr37194	transcription start site region 37194	601 bp upstream
Tssr37195	transcription start site region 37195	1871 bp upstream
Tssr37196	transcription start site region 37196	1897 bp upstream
Tssr37197	transcription start site region 37197	1933 bp upstream
Tssr37198	transcription start site region 37198	1955 bp upstream
Tssr37199	transcription start site region 37199	1970 bp upstream
Tssr41631	transcription start site region 41631	465 bp upstream
Tssr41632	transcription start site region 41632	388 bp upstream
Tssr41633	transcription start site region 41633	1566 bp downstream
Tssr41634	transcription start site region 41634	1766 bp downstream