rs244312647 SNP Detail

Summary

• ID
  rs244312647
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:29942904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGATTAAA AAAAGGTGTG
  CACCCTCTGC ACCAGCCACA TCTTTAGAAT TGTAAAGAAG GCACTTTGTT ATCCCTGTCC
  ACTATTGGTG TGATAGCGTG TGCCTTTTAC ATTATTTAAT ACTCAAGGAT GTGCGTGTAC
  TTTTAGACCT TGTCTGATGC CTTTCTAAAG AACAAGCAAA TAGAACAGAA TTGTCCTTTC
  K
  ACTTGGTTCT GCTTTGCAGG ATTCTTAAAA ACTGACACTT TGAAAATGAT TGTATGTTAA
  GTCTTAAATT TACCCAGGAC ACCATCTGGT AGTGAAGGGC CTACAGTTAA AGGCAGGATT
  TTGTAGGAGG GATTAGAGTG GCAAATTAAT ATTATTTTCA TGTATAGAGT TTAAGAGAGT
  AACTTTGGGA ATAAAGTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364407812	MGP_WTSI_5_30064446	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244312647					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364407812	MGP_WTSI_5_30064446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:29942904 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15670	CpG island 15670	1250 bp distal
Del(5D5Mit348-D5Mit389)6Jcs	deletion, Chr 5, John C. Schimenti 6	within coordinates
Dnajb6	DnaJ heat shock protein family (Hsp40) member B6	within coordinates
Gm5129	predicted gene 5129	1970 bp upstream
Gm72214	predicted gene, 72214	1074 bp downstream
Rr377760	regulatory region 377760	within coordinates
Rr608877	regulatory region 608877	1474 bp distal
Rr608879	regulatory region 608879	1235 bp distal
Rr608880	regulatory region 608880	1132 bp distal
Rr608881	regulatory region 608881	659 bp distal
Rr608882	regulatory region 608882	258 bp proximal
Tssr45550	transcription start site region 45550	1917 bp downstream
Tssr45551	transcription start site region 45551	1895 bp downstream
Tssr45552	transcription start site region 45552	1766 bp downstream
Tssr45553	transcription start site region 45553	1446 bp downstream
Tssr50467	transcription start site region 50467	1981 bp upstream
Tssr50468	transcription start site region 50468	1961 bp upstream
Tssr50469	transcription start site region 50469	1478 bp upstream