rs244322150 SNP Detail

Summary

• ID
  rs244322150
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58955247 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATAGCTT GCTTTCCCCT ATGAGCATGG
  TGAGAAAGAA GAACGCGGCg gggagggaga gggaaaggaa aaggaaaagg gagGATTCCT
  ACAATACGAA TCAGAGCATT TTTTTCAGAG CCTAACCAAA CAGGGCTTCC ATTTAAAAAA
  R
  GGGGAGCTAG TCTGTACTGC GATGTGGAAG AGATGTAAGA ATTAGGGACC AAGGAAGCAT
  CGCTGCATTT TAGATGTACC GGGGTCTAAA GGGGGcacac acacgcacac gcgcacacat
  gcacacccgc acaGCTACCC CGCCAAGGTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324354886	CHEV_13_58908794	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244322150					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58955247 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5731	CpG island 5731	within coordinates
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273002	regulatory region 273002	847 bp distal
Rr281494	regulatory region 281494	within coordinates
Tssr120082	transcription start site region 120082	811 bp downstream
Tssr120083	transcription start site region 120083	778 bp downstream
Tssr120084	transcription start site region 120084	260 bp upstream
Tssr120085	transcription start site region 120085	386 bp upstream
Tssr120086	transcription start site region 120086	428 bp upstream
Tssr120087	transcription start site region 120087	451 bp upstream
Tssr120088	transcription start site region 120088	830 bp upstream
Tssr120089	transcription start site region 120089	1250 bp upstream