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rs244323220 SNP Detail
Summary
  • ID
    rs244323220
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr4:19877544 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCATGGAGT TGACTTCAAG
    CTCTTACCTG CTGAGTCATC ATGTTGACTG CACAGATTTA ATTTGTGAAG CAGAGCAAGC
    ATAGACTATA TTTAAGAAAA ATTTCCTATT TAAAGAAAAG ATTGGAGACA CATTTTGCTA
    TTTTTCTTTT TCTGAGCAAC CTCTGCATTG TTTCAACTTT ATGTAGCAAC CATGCTGTAT
    M
    TACATCTTCT GAAGGAATAA AGTACAATTA GTTGGATTTT CTGGAATAAA GTATGACAGA
    ACCACTGGTA TACATATCGA TATAAGTTAT TCATCCTTCT GTCTGTCTGT CTGTCTGTCT
    CTCTCTCTCT CTCTCTGTCT CTATGTGTGC GTTGATAATC TAATTTAGTA ATAAATTTAA
    CAATGCTTGC ATTTGGGGAA                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss360789979 MGP_WTSI_4_19804691 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs244323220 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss360789979 MGP_WTSI_4_19804691 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:19877544 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Atp6v0d2 ATPase, H+ transporting, lysosomal V0 subunit D2 within coordinates
Gm68467 predicted gene, 68467 within coordinates
Tssr41030 transcription start site region 41030 402 bp upstream
Tssr41031 transcription start site region 41031 340 bp upstream
Tssr41032 transcription start site region 41032 323 bp upstream
Tssr41033 transcription start site region 41033 257 bp upstream
Tssr41034 transcription start site region 41034 225 bp upstream
Tssr41035 transcription start site region 41035 199 bp upstream
Tssr41036 transcription start site region 41036 149 bp upstream
Tssr41037 transcription start site region 41037 61 bp upstream
Tssr41038 transcription start site region 41038 within coordinates
Tssr41039 transcription start site region 41039 9 bp downstream
Tssr41040 transcription start site region 41040 51 bp downstream
Tssr41041 transcription start site region 41041 78 bp downstream
Tssr41042 transcription start site region 41042 85 bp downstream
Tssr41043 transcription start site region 41043 114 bp downstream
Tssr41044 transcription start site region 41044 202 bp downstream
Tssr41045 transcription start site region 41045 227 bp downstream
Tssr41046 transcription start site region 41046 263 bp downstream
Tssr41047 transcription start site region 41047 331 bp downstream
Tssr41048 transcription start site region 41048 350 bp downstream
Tssr41049 transcription start site region 41049 472 bp downstream
Tssr41050 transcription start site region 41050 611 bp downstream
Tssr41051 transcription start site region 41051 756 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory