rs244332057 SNP Detail

Summary

• ID
  rs244332057
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3072667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTATTT CCTGTAGAAC
  CCCTCAGGTT CAGCCCTAGT ACTTGTTAGG GAAACAGCCT CCAACTCAGA AACCTGCCTG
  CCTCTGCCTC TACACTGCCT CCAGAGTGCT GGCATTAAAG GCTTGTGACA CCACTGAATG
  TTGGGTTTTC TATGTCTTTC CTTGGTCATG ATGTCTGTTC TCAGCTGTAA AGCCCTAACA
  T
  GTAGTTGTTA TGAGTCCTAG GTCCGCCAGA GCTACACAGT TTGGCCTTAT CTACAACAAA
  ACTACAACAC ATAAAAATAA TTTTTCTTTC TTTCTTTTTT CTTTCCTTCT TTCTGTCTTT
  CTGTCTGTCT TTCTTTCTGT CTTTCTTTCT GTCTTTCCTG TAGAATCCCT CAGGTTCAGC
  CCTAGTACTT GTTAGGGAAA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382236860	MGP_WTSI_11_3022670	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244332057					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382236860	MGP_WTSI_11_3022670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3072667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2431	CpG island 2431	597 bp proximal
Gm74511	predicted gene, 74511	within coordinates
Rr369110	regulatory region 369110	1154 bp upstream
Rr402381	regulatory region 402381	1442 bp downstream
Rr441449	regulatory region 441449	within coordinates
Rr441450	regulatory region 441450	252 bp proximal
Rr441451	regulatory region 441451	659 bp proximal
Rr441452	regulatory region 441452	818 bp proximal
Rr441453	regulatory region 441453	1365 bp proximal
Rr441454	regulatory region 441454	1757 bp proximal
Rr441455	regulatory region 441455	1980 bp proximal
Tssr100004	transcription start site region 100004	1332 bp upstream
Tssr100005	transcription start site region 100005	1376 bp upstream
Tssr106442	transcription start site region 106442	1238 bp downstream