rs244336316 SNP Detail

Summary

• ID
  rs244336316
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52204563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCACCCCA CTTTTTTTCC
  CCTTCCTTCC CATTCCCCTT TTCCTTCTTT TGTTACTCCC CTCCCTCCCT TCCTCTCTTT
  CCCCCCCGCC CCCATCTCCA GCGCCCCTGC CTTGGTTATC CTTGAAACAG AACAACAGAG
  ATCCCATAGT CAAACTACAG CTCAAGTCCA GTGCTACAAA TTAACCCGGG AGGAACACTG
  R
  ACATTGACTT TAATCTCATC CTTTGGTCAA ATGGAGGATG TTATTTTTCA CCCCTTAGAA
  TCTTTGGGAA TAAGAGAAAA AAAGTGAGAA GGCCACAGCC ACTGTTGTTA ATGGGAGGGG
  CGGTGGCCCC ATCCCAATCT GGAACACAAA GCAACAGCTC TTAGAAACTG TGTAATTAAA
  TTCACGTGTG AATTTTGTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368308954	MGP_WTSI_6_52177582	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244336316					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368308954	MGP_WTSI_6_52177582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52204563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17431	CpG island 17431	1204 bp distal
Cpgi17432	CpG island 17432	1401 bp proximal
Gm57855	predicted gene, 57855	within coordinates
Gm68361	predicted gene, 68361	within coordinates
Hoxa9	homeobox A9	1394 bp upstream
Rr135831	regulatory region 135831	1638 bp proximal
Rr146300	regulatory region 146300	within coordinates
Rr146301	regulatory region 146301	837 bp proximal
Tssr61009	transcription start site region 61009	1719 bp upstream
Tssr61010	transcription start site region 61010	1627 bp upstream
Tssr61011	transcription start site region 61011	1421 bp upstream
Tssr61012	transcription start site region 61012	1387 bp upstream