rs244343859 SNP Detail

Summary

• ID
  rs244343859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80139875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGGGTTT AGGGCGTGCC
  GCCGCCATTT CTGCTTGCTG TCTGCCGGTT TAAGTTGTGT GCTCGGGTGT CCCTTTCCTC
  TTCCCCTCCC GCAGGGCTTG CGGCCACCAT GGCGTATTAG AGGCAGCAGT GCCTGCGGCA
  GCGTTGGCCT TTGCAGCGGC GGCAGCAGCA CCAGGCTCTG CAGCGGCAAC CCCCACCGGC
  Y
  TAAGCCATGG CGTGAGTATG GGGCCGGCCG CGGAGGGCGG GGGCCTCGCT GTGGTTGGGT
  GCGGCCCGGG CGCGGTGGCC GGCACACGCG GTTTTACAAG CGGCCGGACG CGTCGGCCTT
  GTTTGCGTTG CCTGCGACGC CGGCGCTCCC GGGCAGAGCT GGGCGGAGGA GTGTCTAAAG
  CGCTACTGCT GCCCCTTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394695420	MGP_WTSI_15_80086104	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244343859					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394695420	MGP_WTSI_15_80086104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80139875 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	within coordinates
Cpgi7369	CpG island 7369	within coordinates
Gm56706	predicted gene, 56706	679 bp upstream
Rr505931	regulatory region 505931	690 bp distal
Rr505932	regulatory region 505932	687 bp distal
Rr505933	regulatory region 505933	480 bp distal
Tssr132199	transcription start site region 132199	493 bp downstream
Tssr132200	transcription start site region 132200	411 bp downstream
Tssr132201	transcription start site region 132201	353 bp downstream
Tssr132202	transcription start site region 132202	163 bp downstream
Tssr132203	transcription start site region 132203	343 bp upstream
Tssr132204	transcription start site region 132204	663 bp upstream
Tssr132205	transcription start site region 132205	1230 bp upstream
Tssr132206	transcription start site region 132206	1408 bp upstream
Tssr132207	transcription start site region 132207	1491 bp upstream
Tssr135431	transcription start site region 135431	674 bp upstream
Tssr135432	transcription start site region 135432	656 bp upstream
Tssr135433	transcription start site region 135433	171 bp downstream
Tssr135434	transcription start site region 135434	1859 bp downstream