rs244352947 SNP Detail

Summary

• ID
  rs244352947
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121847631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAACCT TTAACATGAA
  CTTACCGGTA TTAGTATATA TTTTACGAAT TCATTTTCAA TTTAGGAATC AGGTACTGTT
  TTTTTTTTTG GGGGGGGGGT TGGTGGTTGG AGACAGGGTT TGTCTGTCTA GCCATGGCTG
  TCTTGGAACT CACTCTGTAG ACTAGGTTGG CCTAGAATTT AGAAATTCAC CTGCCTCTGC
  Y
  TCCCAAGTGC TGGGATTAAA GGCCTGCGCC ACCACTGCCG GGCTCAAGTA ATGTTTTAAA
  CCCTAGATTT GTTACTTATT TTGGCTTCTT TTGGAAACAG TGTTTCACAG AGCTGGTAAA
  AATGTACTAT GTAGTAGTAG CCAAGGTTGG CCTTGAACTC TTTTCCCTGT GACCTCTATC
  TCCCGAATGC TGGGATTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321668343	CHEV_5_122159577	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244352947					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121847631 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	666 bp downstream
Cpgi16531	CpG island 16531	1461 bp proximal
Gm71700	predicted gene, 71700	1242 bp downstream
Rr619651	regulatory region 619651	840 bp proximal
Rr619652	regulatory region 619652	1887 bp proximal
Tssr53053	transcription start site region 53053	1887 bp downstream