rs244353100 SNP Detail

Summary

• ID
  rs244353100
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117938942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGAACA ACATTCTATA
  GACACACCTG GTGTTTCTTC AGGCTAAATT CCCCAAGTGT AGACAAGACA ACCTTTAAGG
  CTTTTGATAC ATGCTTTTAA ATTGCCTCAG AAGGAGAAGT TTCTGGCAGG ATGGTACCCC
  CCCCCCCGCA CCCCGCACCA CCCCCCCCCC CCCCCCCCGC CAGCAATCAG TTGAAACCAT
  R
  TATCTGGTTT TATCTGGTTG TCACTATCAC CATTCAAAAT TGTGCGGGGG TTGGGGGGAG
  GATATGCCGT CTCGTTTCTA CTTTATTTCC ACTTGCATGA CTTGATTACA TTATGGAACC
  ATGTCAGTCG TCTGTGTAAG CAGGGGGGTT GCTGAGGAGG GAGAAAGGCA TGGTCTGAGC
  CAGTCTCCAG GGTGAGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323501463	CHEV_10_117540093	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244353100					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117938942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	161 bp proximal
Gm66186	predicted gene, 66186	within coordinates
Gm66289	predicted gene, 66289	1830 bp upstream
Rr369079	regulatory region 369079	174 bp upstream
Tssr3367	transcription start site region 3367	1067 bp downstream
Tssr99497	transcription start site region 99497	204 bp downstream