rs244358023 SNP Detail

Summary

• ID
  rs244358023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:37298455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTTACAC AGAGAAACCC
  TGTCTCGCAA AACAAAACAA AACAAAACAA AACAAAACAA ACAAACAAAG AAGCAAGGTT
  GTCTCCATCT TACTGAGTCA GAAACCAAGG CCCCGAGTCC ATATTCACAC CCCGGTCAGG
  CAGAGTGGCA AGCCCTGCTT CCTCCCAGTG GTGCCCAGCA CATTAACTTA GAGAACCTCC
  R
  ACACACAGCT GGAGGTGGTA TGAATGGCCT CTGCAGCAGT CACACTAGTA TCCACAGGCA
  CAGTGCTCTG TGATCATCCA CTAGAACCCT GCTGCTTGTC TCAGGCGAGC CTCAGGGCAA
  CACCTCGCCC TCACTCAGAC ATCAGCTCCA TCCCTTCCTG TACTTGGATA CTGTCCTTGG
  CAATGCCAGC TTCAGCAAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ
ss349270881	MGP_WTSI_1_37316219	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	QSi5/Ianm	RF/J	SEA/GnJ	SPRET/EiJ	SWR/J	WSB/EiJ
rs244358023					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349270881	MGP_WTSI_1_37316219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:37298455 () rs orientation: forward

Symbol	Name	Function Class
Cnga3	cyclic nucleotide gated channel alpha 3	within coordinates
Cpgi160	CpG island 160	1904 bp proximal
Gm69908	predicted gene, 69908	983 bp downstream
Rr409496	regulatory region 409496	720 bp distal