rs244367878 SNP Detail

Summary

• ID
  rs244367878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132185430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATCCC ATGTGCACAG
  AAGCACATGC ACACGTGAGA CCTAAAGAAA TAACTGTAAT CTAAAACAGA AGGTAGATGA
  GCCAACAGTA AATTTCACTA AGGCTGTTGG TAGGATCCTG GGTAAGACTC CTATAAAAAA
  GAAAGTGGAC TGAAAGTTTT CCTGGCAGAA AAAGAAAAAA AAAGAAAAAG AAAAAGAGAA
  R
  GAGAAGGAGA AAAAGTATCT GACTTTTCAA ATCTAAGACT ATGAGCCTTT TGTCTTTCTT
  CTCTGTGTAG CCTTGGCTGT CTTGGAACTT GCACTGTAGA CCACAGGTCT GCCTGCCTCT
  GCCTCCTGAG TGCCAGGACT AATGTTAATG GCATGCACCA CCAGCACATG GCCCTTTTCT
  TGCCTGAACA TGTCTGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
ss363294685	MGP_WTSI_4_132014034	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SWR/J	ZALENDE/EiJ
rs244367878					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363294685	MGP_WTSI_4_132014034	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132185430 () rs orientation: forward

Symbol	Name	Function Class
Med18	mediator complex subunit 18	612 bp downstream
Rr377204	regulatory region 377204	within coordinates