rs244371023 SNP Detail

Summary

• ID
  rs244371023
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12656238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTAGC TAGTACTTCA
  GAGGTCCGCC AGAAGACGGG CGTGGCGCTG TTTCTAAAAG TGCGCATGCT TTACCCGGCT
  CAAAGGGCGC CTCTCATCCT AGCGCTTGAT TGGTTGGTGA GCACGCTGTT TTCATCTGCG
  CGTGCGTCTC TACCTCTGAC CCGGAAGTTT TCGCTTTGCA TAAAAGCGCT AGTCCGCTGC
  S
  CGCGGCCTCT TCCTGTCTGT ATCAGGGCGG CGCGTGGTCC ACGCCGAGCG ACTGAGAAGC
  CCAGTCTGCG CCCTCAGGTG AGGCTGCGGA GGGACACGGA GTTCAGAAGA GGTGACCATG
  AGTGTTCTAA GGCACATCTG GGGGGCCGGA GGCCGAACCT GAAGCCTGGG CGTGACCGCT
  TGGATCTCAC CGTTTCTCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322106842	CHEV_7_13507660	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244371023					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12656238 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18322	CpG island 18322	within coordinates
Gm57203	predicted gene, 57203	184 bp upstream
Rps5	ribosomal protein S5	within coordinates
Rr368230	regulatory region 368230	63 bp downstream
Rr642402	regulatory region 642402	221 bp distal
Rr642403	regulatory region 642403	11 bp distal
Rr642404	regulatory region 642404	65 bp proximal
Tssr64485	transcription start site region 64485	4 bp upstream
Tssr64486	transcription start site region 64486	643 bp upstream
Tssr70626	transcription start site region 70626	215 bp upstream