rs244375118 SNP Detail

Summary

• ID
  rs244375118
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:80367590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGCGA GCCCTTTTCC
  CCATGTTATG TAATCAGATG TAGGTGTGGG GTCACCAAAA CCCATCCTAT ATTTGAAGAC
  TAGCTGCTAA AGTAGTTGGA TTAAAAAAGT TTCACATTAC TGCTCCAGTT TGTATTTCAT
  ACCATTTACA GTTTGCTTTC CTTTGGCTTA ATCTGGAGTT TTTATGGTTT TGTCCCCTCC
  Y
  GCCCGCCCCC TTTTGTGAGC TAACTAGCTT TTAAGATTTC TGTTTTAGAA TCACCAGGCT
  ATGTATTTTT CAGAGTATGT AAATATGGAA CACTTTGCAC TTATGACAGG TATGTCCATT
  GAAACATTCT TTGATGCTTC CCAAACCATC CTACCATTTG ATATCTCTTA TTTTCAGAAA
  TGTAGGAAGC TCCAGTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375288944	MGP_WTSI_8_82164860	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244375118					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375288944	MGP_WTSI_8_82164860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:80367590 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20624	CpG island 20624	522 bp distal
Gm51579	predicted gene, 51579	1056 bp upstream
Otud4	OTU domain containing 4	within coordinates
Rr400987	regulatory region 400987	1478 bp downstream
Rr665883	regulatory region 665883	1247 bp distal
Tssr78137	transcription start site region 78137	1563 bp downstream
Tssr78138	transcription start site region 78138	1537 bp downstream
Tssr78139	transcription start site region 78139	1490 bp downstream
Tssr78140	transcription start site region 78140	1442 bp downstream
Tssr78141	transcription start site region 78141	1231 bp downstream
Tssr78142	transcription start site region 78142	1181 bp downstream
Tssr78143	transcription start site region 78143	774 bp downstream
Tssr78144	transcription start site region 78144	743 bp downstream
Tssr78145	transcription start site region 78145	720 bp downstream