rs244377036 SNP Detail

Summary

• ID
  rs244377036
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115151674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCCTC TAATGGCGTC
  TCCTTCCTCC TACGTCACAC CCCTCGTCAC GTGACCGCGG TGGGCGGAGT CGGCGGCGGG
  CGAGCCTGGG CCTGTTTCCG CGTCCGCACG AACCGGCTCA GCATCCCGGG AATCCTGCGG
  TGGGAAGGAG CTGATCTTTG CGATCTGACC CCACTCTGAT GGAATAGAAT ACAGGACATG
  R
  TCGCCCGGCC CGAGGAATGG TCCCAAAGCG GATAGCCATC ACACCAGGGG TCATCACACG
  CAAAGTCCGG CCAAGGTGCC CTTGAGTCTC TTTCTCTGGG CGCACAAATC CGGGCTCATG
  AACTTTACAG TTCGTCCACA CGGCCAGGTC CTCGAGTCAT CGTCCAGGTC TCAGCTTAAA
  CCGGAAAGGC TTCCCTGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484108	CHEV_10_114752825	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244377036					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115151674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	within coordinates
Gm67120	predicted gene, 67120	within coordinates
Rab21	RAB21, member RAS oncogene family	134 bp upstream
Rr402237	regulatory region 402237	4 bp downstream
Rr402238	regulatory region 402238	391 bp upstream
Rr439193	regulatory region 439193	180 bp distal
Rr439194	regulatory region 439194	130 bp distal
Rr439195	regulatory region 439195	within coordinates
Rr439196	regulatory region 439196	37 bp proximal
Rr439197	regulatory region 439197	1761 bp proximal
Rr439198	regulatory region 439198	1902 bp proximal
Tssr95806	transcription start site region 95806	715 bp downstream
Tssr95807	transcription start site region 95807	675 bp downstream
Tssr95808	transcription start site region 95808	99 bp downstream
Tssr95809	transcription start site region 95809	75 bp downstream
Tssr99318	transcription start site region 99318	882 bp upstream
Tssr99319	transcription start site region 99319	839 bp upstream
Tssr99320	transcription start site region 99320	247 bp upstream
Tssr99321	transcription start site region 99321	154 bp upstream
Tssr99322	transcription start site region 99322	145 bp upstream