rs244388990 SNP Detail

Summary

• ID
  rs244388990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90852573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCCTG TTCAAATGCT
  TTTTTTTTTC TTTTCTTTTT TAGAGTTCCT GGTGGAGGGA CACAGGATGC TAGTAAATAA
  CTGTGACAAC ATAGCTTCTG TTGCTTGGCA TTGGGGACGT TTTAAAGTAA GAAAAGTCAG
  GAAAGTCACT GGCGAGGCTA GAAATGTTGT CAATACTGTA TGACTTTAAA GATGAGTCCC
  Y
  GTTGAAAAGA GCCACATCTA AGAATGAGAT GAACATACAT GTTTGCCAGC CTTTGTACAA
  GGAACTGCCT TCCCTTCTGC TGTGGATGAG CAAACTCTGC CCCCGGGAGG GATGCCTGGC
  CTTAGTATGG ATGCGAAGCC TCTGCAGCCC ACAGATAGCC AGGTACTTGG TGGGGAAGGT
  GCTGGAACCA CATAGGGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397311876	MGP_WTSI_16_91055930	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244388990					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397311876	MGP_WTSI_16_91055930	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90852573 () rs orientation: forward

Symbol	Name	Function Class
4931406G06Rik	RIKEN cDNA 4931406G06 gene	within coordinates
Cpgi8437	CpG island 8437	1015 bp proximal
Epcip	exosomal polycystin 1 interacting protein	within coordinates
Gm60345	predicted gene, 60345	within coordinates
Rr322308	regulatory region 322308	1773 bp distal
Rr322309	regulatory region 322309	973 bp distal
Rr328102	regulatory region 328102	within coordinates
Tssr4953	transcription start site region 4953	740 bp downstream
Tssr139330	transcription start site region 139330	891 bp upstream
Tssr139331	transcription start site region 139331	1080 bp upstream
Tssr142065	transcription start site region 142065	725 bp downstream
Tssr142066	transcription start site region 142066	756 bp downstream
Tssr142067	transcription start site region 142067	817 bp downstream