rs244389132 SNP Detail

Summary

• ID
  rs244389132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21901897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTGTCC TTGACACTGG
  CGACGGGCAG AAGGATGCGG GTGTTGTATA GGGGCAGCTT TCCTTCTAGC GTGGCCAGGA
  ACTGCGGGGG GGGGGGGTAG GGGGAGGCCG GAGAGAGATG TGGGATGGCA GTGAGGCTCT
  GTTCCACCTC CGTGCACCTT ACATTGAGTT TCTACCGGAT TCTAGGTGGA GATCACTGCC
  Y
  ACCCTTCGCT GCCTGGTTTC GGAGGCCCTG CCACCTGAGA TCCACCCAGT CCAGGCTTCG
  CTACTCTGGT TATGAAGCTC ACGCCCATTC AGCACCTGTT TCCTATGTCA GTCTGCTCTC
  TGATTTTCGA CCCTCCCTCC CCCACCCCCA CCCCCACCCC CTGCCTTGGT CCCCACTGGC
  CGCGGAGGAT GTGTGTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376878309	MGP_WTSI_9_21795045	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244389132					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376878309	MGP_WTSI_9_21795045	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21901897 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21468	CpG island 21468	1051 bp distal
Cpgi21469	CpG island 21469	376 bp distal
Cpgi21470	CpG island 21470	1066 bp proximal
Gm36414	predicted gene, 36414	within coordinates
Odad3	outer dynein arm docking complex subunit 3	within coordinates
Rgl3	ral guanine nucleotide dissociation stimulator-like 3	1132 bp upstream
Rr206074	regulatory region 206074	96 bp distal
Tssr88431	transcription start site region 88431	1177 bp upstream
Tssr88432	transcription start site region 88432	1145 bp upstream
Tssr88433	transcription start site region 88433	1489 bp downstream