rs244391598 SNP Detail

Summary

• ID
  rs244391598
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178233836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCTCCC GGGCGACCGG
  CTCCGCACCA AGATGGCGGA GGAAAGGGAC GCGGAAGGGA CAGGTAGGAC CCTGCCTGGG
  GTGCCACGAC GTCGCCTCTG CGCCTGAGGA AGCGCCCCCC GGCCAACATC TTGAGCCCCT
  CGGCGTGGCG ACAGTGGGCT GAAAAGCGGC GCCAGCCCGC GTCCCCACCG TCCGCCCTCC
  M
  GTCCCCTCGA GAGGTCTGCG CGGGCTGTTG TAGCCCCCGC CGGGGAGGTT CATAATGGCG
  TCCTTGTCCC TGGCACCTCC CCTCCCCGTG AGGGCGCCAG CCGCGGTCTG GGTGGGCTGT
  GGGTAACCCG GAGGGCGGCC TCATGGAGGA CTGGAGCTGC GACTAGAACC TGGCGGGATC
  CTCTGCGGCT GTGCCGAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352536911	MGP_WTSI_1_180336402	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244391598					SNP	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352536911	MGP_WTSI_1_180336402	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178233836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1092	CpG island 1092	within coordinates
Efcab2	EF-hand calcium binding domain 2	within coordinates
Gm70920	predicted gene, 70920	within coordinates
Gm70923	predicted gene, 70923	218 bp upstream
Rr29069	regulatory region 29069	within coordinates
Rr372517	regulatory region 372517	within coordinates
Tssr10392	transcription start site region 10392	251 bp downstream
Tssr10393	transcription start site region 10393	237 bp downstream
Tssr10394	transcription start site region 10394	226 bp downstream
Tssr10395	transcription start site region 10395	201 bp downstream
Tssr10396	transcription start site region 10396	166 bp downstream
Tssr10397	transcription start site region 10397	224 bp upstream
Tssr15493	transcription start site region 15493	144 bp downstream