rs244393562 SNP Detail

Summary

• ID
  rs244393562
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4561337 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GAACAGCTTA GCCTGAGCTG
  ACTCTGAAAG CCTTCAGGTG TATGAGCCTT CTATAAACTG CTTGGCATTT CCTGCCGTGA
  TTTACAAGTC CTGTTTGCTT TGGGGCTTTA ATCTGGTGTT TTGTTTTGTT GAGACAAGGT
  CTCACTCTGC ATTTCAGACT GGCCTTAAAC TCTCAGGATT CCCCCTGCCT CGGTCTTCCA
  W
  GTGCTAAACT TACAGGCGTA AGCCAACATG ACTGGCTTTT TAAAAACTTA TTTTGTTTGT
  TATTCTTTCT TTTTTTTTTT TAACTCAGAG ACAAACACGC TGAAGCAATA ATATGAGATA
  AAAAGCATTT TAAATTTATT TTCCTTTTTG GTACTAGGGA TAAACCCAAA ACTTTGATGT
  GCTAAGCAAA CACATTACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379309198	MGP_WTSI_10_5735204	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244393562					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379309198	MGP_WTSI_10_5735204	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4561337 () rs orientation: reverse

Symbol	Name	Function Class
Esr1	estrogen receptor 1 (alpha)	652 bp upstream
Rr368918	regulatory region 368918	1033 bp upstream
Rr426997	regulatory region 426997	162 bp proximal
Rr426998	regulatory region 426998	695 bp proximal
Tssr92263	transcription start site region 92263	283 bp upstream
Tssr92264	transcription start site region 92264	476 bp upstream
Tssr92265	transcription start site region 92265	501 bp upstream
Tssr92266	transcription start site region 92266	533 bp upstream
Tssr92267	transcription start site region 92267	608 bp upstream
Tssr92268	transcription start site region 92268	634 bp upstream
Tssr92269	transcription start site region 92269	714 bp upstream