rs244397887 SNP Detail

Summary

• ID
  rs244397887
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:67973209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAGCCCA AAGGCCCTGT
  CTAAAGACAG AGCCTTGCAC TGAACCCTGA GTTTTAAATA GCAAAGCAAA AGTTCTGAGA
  ACCTGCGAGA ACCACCCTGA AACTGGGTTG ATTTCCTCAT CTTTGGGGCT GTTTTCAGAA
  CCCAGATACC CAGCAGATTC TGGGAACTAC CAAGGTTAGA ACGGAGGAGA CCAAGCATAC
  Y
  GATCACACAA CTCTAAATAT GGAGTCTTTG GTTCTTAATT GGCCAAGGCC CTGCAAATGA
  AAACCCGACT TTTACTTCCA ACTAGGATTC CCCTCCCCCC AGTCCCCCAC TCCACCCAGC
  ATAGTCTTTG TATTCTTTGT CCGGAAGGCT GGGTACAGCA TTGTTATACC TGAATGGACC
  ATCTTTGAGG GTGGGGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380752615	MGP_WTSI_10_67600127	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244397887					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380752615	MGP_WTSI_10_67600127	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:67973209 () rs orientation: forward

Symbol	Name	Function Class
Arid5b	AT-rich interaction domain 5B	within coordinates
Cpgi1679	CpG island 1679	686 bp distal
Rr384864	regulatory region 384864	within coordinates
Rr433197	regulatory region 433197	764 bp distal
Rr433198	regulatory region 433198	824 bp distal
Rr433199	regulatory region 433199	263 bp distal
Rr433200	regulatory region 433200	800 bp proximal
Rr433201	regulatory region 433201	1881 bp proximal
Tssr3230	transcription start site region 3230	643 bp upstream
Tssr3231	transcription start site region 3231	622 bp upstream
Tssr3232	transcription start site region 3232	545 bp upstream
Tssr93877	transcription start site region 93877	352 bp downstream
Tssr93878	transcription start site region 93878	403 bp upstream
Tssr97991	transcription start site region 97991	767 bp upstream
Tssr97992	transcription start site region 97992	755 bp upstream
Tssr97993	transcription start site region 97993	741 bp upstream
Tssr97994	transcription start site region 97994	702 bp upstream
Tssr97995	transcription start site region 97995	683 bp upstream
Tssr97996	transcription start site region 97996	671 bp upstream
Tssr97997	transcription start site region 97997	657 bp upstream
Tssr97998	transcription start site region 97998	597 bp upstream
Tssr97999	transcription start site region 97999	171 bp upstream
Tssr98000	transcription start site region 98000	5 bp upstream