rs244399393 SNP Detail

Summary

• ID
  rs244399393
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48406257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACCAAC TATTGAGTCT
  TAAAGCAAGA AGGTACAGGA CTGGTAGATT TAAGCATGCC AGTCCTGCTT TCCTGCGTTA
  TGTTTATGGA GTTTTTAAAA CACTTTAACG TCTGCAATTT CACACGGAAG TTAAGCGGAT
  AGACTCGGAA ACACATCCTG CACGATGCGG CAAAGGCCAA TGAACTCAAA TGGGAAGGCA
  M
  GGTACACAGG AAAGAGGAAA GCAAGTACTG AGGTTCCACC TCGGATCCCT GGACTTTTCC
  AAGGTGGAGA CGCAGATGTC CCCATCATCC GACGTCACTT TCGGCCCGAA CGCCGCGGAA
  TTCCGGCTCG GCGCGCTCCG CTCCTTGGCC CGGCCTGTGA ATGCCACAGC CGCCCTAGGA
  CCGTGCCCGC CCCTTACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377499862	MGP_WTSI_9_48303062	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244399393					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377499862	MGP_WTSI_9_48303062	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48406257 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	1022 bp downstream
Cpgi21716	CpG island 21716	within coordinates
Gm5617	predicted gene 5617	485 bp upstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	within coordinates
Rr195326	regulatory region 195326	1744 bp proximal
Rr206379	regulatory region 206379	within coordinates
Rr401354	regulatory region 401354	261 bp upstream
Tssr2862	transcription start site region 2862	915 bp downstream
Tssr84988	transcription start site region 84988	92 bp upstream
Tssr84989	transcription start site region 84989	115 bp upstream
Tssr84990	transcription start site region 84990	254 bp upstream
Tssr84991	transcription start site region 84991	304 bp upstream
Tssr84992	transcription start site region 84992	411 bp upstream
Tssr84993	transcription start site region 84993	449 bp upstream
Tssr84994	transcription start site region 84994	946 bp upstream
Tssr89390	transcription start site region 89390	549 bp upstream
Tssr89391	transcription start site region 89391	530 bp upstream
Tssr89392	transcription start site region 89392	500 bp upstream
Tssr89393	transcription start site region 89393	25 bp downstream
Tssr89394	transcription start site region 89394	309 bp downstream
Tssr89395	transcription start site region 89395	317 bp downstream
Tssr89396	transcription start site region 89396	364 bp downstream