rs244416565 SNP Detail

Summary

• ID
  rs244416565
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131455064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAAAGCAGC AGCATCCGCA
  ACGCGTCCAC CCGCCCAGTC CCGGTTTGTT CAGTCAGAGC AGCAGCAGCC GGGCGTACGG
  GGAGGGAAGG GGAGAAGGAG CCTTTACCTG GCTCTGCCGC GACCGGTCCC AGGCCCAAGG
  TTCCGCTTCC CACTTAGCGT TCTCCTCCCC GCCACCCTCT TCTACGCAGT TCGGCCCCCC
  R
  GTTCCCTAAG GAGACTCCGC CAACTCCGCA AGACCCCGCC GGGAAGCTGA ACCCACCCCT
  TTGCCAATCA CCGCCCGCCT AATAGCGACT GACGGGGACT ATAGCCAATA GGAACAACTG
  ATCCATAGAC GCCAGGAGTA GAGGCGGGGC TGACGAAACT TAGAGGTGTG GCGAACACTA
  GCTGCCTAGG CGCAGTCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351452113	MGP_WTSI_1_133423903	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244416565					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351452113	MGP_WTSI_1_133423903	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131455064 () rs orientation: forward

Symbol	Name	Function Class
Cpgi711	CpG island 711	within coordinates
Fam72a	family with sequence similarity 72, member A	577 bp upstream
Gm70877	predicted gene, 70877	within coordinates
Rr396286	regulatory region 396286	within coordinates
Rr396287	regulatory region 396287	267 bp upstream
Srgap2	SLIT-ROBO Rho GTPase activating protein 2	within coordinates
Tssr8628	transcription start site region 8628	1873 bp downstream
Tssr8629	transcription start site region 8629	532 bp upstream
Tssr8630	transcription start site region 8630	575 bp upstream
Tssr8631	transcription start site region 8631	654 bp upstream
Tssr8632	transcription start site region 8632	1035 bp upstream
Tssr13592	transcription start site region 13592	1975 bp upstream
Tssr13593	transcription start site region 13593	1898 bp upstream
Tssr13594	transcription start site region 13594	1788 bp upstream
Tssr13595	transcription start site region 13595	1741 bp upstream
Tssr13596	transcription start site region 13596	1708 bp upstream
Tssr13597	transcription start site region 13597	1479 bp upstream
Tssr13598	transcription start site region 13598	778 bp upstream
Tssr13599	transcription start site region 13599	736 bp upstream
Tssr13600	transcription start site region 13600	581 bp upstream
Tssr13601	transcription start site region 13601	33 bp upstream
Tssr13602	transcription start site region 13602	within coordinates
Tssr13603	transcription start site region 13603	197 bp downstream