rs244417894 SNP Detail

Summary

• ID
  rs244417894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37166771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCCCTCC CCAGCCCTGC
  TCACCAGCTG TCCCTAGAGA AGGCGCGAAG GAACCAGACA CCAGGAGCCA GGGAGGACCG
  CATCTTGAGG CGCCGGCACT CGAAGCTGAG ACTATGGAGG GTGCAGAGCC GGCGCGCGTC
  CCGGCCAGCG GCGGCAGCGA TTTAAATGCC CCGCCGACTG GCCCGCCCCA GGCAGGCCCA
  W
  GGCCAGAGCC TCCGCCCCTT GAACATGACC GGCCTGCCCT CTAGGTCGCG CCGAGTGCAA
  GTCCTAGCTA TCCCTCTGTG CTCACTAGCC ACTGTTTTCT ATGTACTGCC ATCTGTTTTC
  TCGAACTTTC TCTCCTAGTC AGAAACCAGC AGTCTTGAGT TTCCTGGGGC TCCTCTTTCT
  TGTCTGGGCT TTTCCATTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377237289	MGP_WTSI_9_37063060	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244417894					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377237289	MGP_WTSI_9_37063060	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37166771 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21569	CpG island 21569	within coordinates
Gm48081	predicted gene, 48081	23 bp upstream
Rr676656	regulatory region 676656	72 bp distal
Rr676657	regulatory region 676657	within coordinates
Rr676658	regulatory region 676658	34 bp proximal
Rr676659	regulatory region 676659	253 bp proximal
Rr676660	regulatory region 676660	561 bp proximal
Slc37a2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	62 bp upstream
Tssr88821	transcription start site region 88821	111 bp upstream
Tssr88822	transcription start site region 88822	83 bp upstream
Tssr88823	transcription start site region 88823	56 bp upstream
Tssr88824	transcription start site region 88824	33 bp upstream
Tssr88825	transcription start site region 88825	14 bp upstream
Tssr88826	transcription start site region 88826	55 bp downstream
Tssr88827	transcription start site region 88827	148 bp downstream
Tssr88828	transcription start site region 88828	171 bp downstream
Tssr88829	transcription start site region 88829	194 bp downstream
Tssr88830	transcription start site region 88830	210 bp downstream
Tssr88831	transcription start site region 88831	255 bp downstream