rs244423771 SNP Detail

Summary

• ID
  rs244423771
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152067489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAATACAG ATGGGAAAAC
  TGAGGGCCAG AGAAGAGAGT GGCTTCAGAC TCAGACACCC AGATAATTGT GGATACTCAA
  GGTAATTGGG ACCAAATATC ACAGATATGT CTGAGAGTGA CCCATGAAAG GTAGCCACTA
  CATCTCTAAA GCCATCCGTA CATAATGCAA GCCACCATCA TTCCCATGTC ATGACGGTGG
  R
  GGTAGGAAAG TCTCTTTGGG AGCAGAGGTG CCAGTCAGCT GACAAACTGT AAAAGGGGGG
  CTGGAGAGGG TGGAAAGCCT ATCCCCGAAT AGACAGTTAT TCTGAGGCAG CTGGGGATAA
  TGGCTGGTAC AGAAATAACC CAGCCTCCTC ACCCTTGTTT CAGCCCTCAC ACCTCTGCCC
  TCCCAGAGGT GAGGCCAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356147173	MGP_WTSI_2_152051305	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	A	G	A	G	G	G	A	A	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244423771					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	A	A	A	G	A	G	G	G	A	A	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356147173	MGP_WTSI_2_152051305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152067489 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12441	CpG island 12441	800 bp proximal
Csnk2a1	casein kinase 2, alpha 1 polypeptide	1270 bp upstream
Gm57421	predicted gene, 57421	within coordinates
Rr55821	regulatory region 55821	111 bp proximal
Rr374080	regulatory region 374080	53 bp downstream
Rr397394	regulatory region 397394	1108 bp upstream
Tssr20780	transcription start site region 20780	971 bp upstream
Tssr20781	transcription start site region 20781	1239 bp upstream
Tssr26784	transcription start site region 26784	1152 bp downstream
Tssr26785	transcription start site region 26785	1662 bp downstream