rs244435214 SNP Detail

Summary

• ID
  rs244435214
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87827682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCCCGTGT TTCTCTAGCA
  TCATGGTAAC ACTTGACTTT GCTCCCATCT CTTATCCTGA AATGTATAAA AAAAGGAGTA
  ATAGTTCACT TATGCAAAAT GCTTGCCTGT TATATGTGAA TCCCCAAGTT TGATCACCAG
  CACCACACAC ACATACAAAT CACAAAACAT GATAAGATTA TGGGCAACTT TTCATCGCTG
  Y
  TGTTAGGCTT CTGTGAGATG CTATTTAGCA TGGTACCACG CCAGTAGCAA CTGTTTTAGA
  AAGCTTACTG CATGCTAGGC TAGCATTTTT ACATTGAGCG TTTTTACTTT GTTGGTTTCA
  TTCAGATAGG TTTCTCATTA TAGCTCAGAC TGATAATGTT TTTTTTTTTT TTTAAGATTT
  ATTTATTTAT TATATGTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358786214	MGP_WTSI_3_87724297	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244435214					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358786214	MGP_WTSI_3_87724297	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87827682 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	518 bp distal
Gm64606	predicted gene, 64606	972 bp upstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	822 bp downstream
Rr579573	regulatory region 579573	983 bp distal
Rr579574	regulatory region 579574	802 bp distal
Rr579575	regulatory region 579575	134 bp distal
Rr579576	regulatory region 579576	222 bp proximal
Tssr29862	transcription start site region 29862	878 bp downstream
Tssr29863	transcription start site region 29863	849 bp downstream
Tssr29864	transcription start site region 29864	817 bp downstream
Tssr29865	transcription start site region 29865	799 bp downstream
Tssr29866	transcription start site region 29866	698 bp downstream
Tssr29867	transcription start site region 29867	662 bp downstream
Tssr29868	transcription start site region 29868	1520 bp upstream