rs244437042 SNP Detail

Summary

• ID
  rs244437042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149981076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTAtcttcc tcttcctcct cctcctcctc
  cttttcttct tcttcttctA GAAATAGAAA AGGACCGAGT TTACTGAGAA AGAGGAGTGG
  GAATGGGGTC AGCTAGTGAG CGGGGGAAAG CCTATGCTCA ACAGCCAGGA CAATTGTCAC
  Y
  CGTTCCCAGT TTGATGTTCC TGTATCTCTA TCTTTGGTAC CTTCCAGGAG AGAAGGAAAT
  GGCTGCAGAA TTGAAAGCCC TCTACAGTGA CATCGATGTC ATGGAACTGT ACCCTGCCCT
  GCTGGTGGAA AAACCTCGTC CAGATGCTAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045541	CHEV_1_151952455	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244437042					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149981076 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9248	transcription start site region 9248	1637 bp downstream
Tssr9249	transcription start site region 9249	1623 bp downstream
Tssr9250	transcription start site region 9250	1422 bp downstream
Tssr9251	transcription start site region 9251	1370 bp downstream
Tssr9252	transcription start site region 9252	1335 bp downstream
Tssr9253	transcription start site region 9253	1310 bp downstream
Tssr9254	transcription start site region 9254	1294 bp downstream
Tssr9255	transcription start site region 9255	1243 bp downstream
Tssr9256	transcription start site region 9256	1038 bp downstream
Tssr9257	transcription start site region 9257	1004 bp downstream
Tssr9258	transcription start site region 9258	988 bp downstream
Tssr9259	transcription start site region 9259	931 bp downstream
Tssr9260	transcription start site region 9260	879 bp downstream
Tssr9261	transcription start site region 9261	860 bp downstream
Tssr9262	transcription start site region 9262	839 bp downstream
Tssr9263	transcription start site region 9263	827 bp downstream
Tssr9264	transcription start site region 9264	778 bp downstream
Tssr9265	transcription start site region 9265	751 bp downstream
Tssr9266	transcription start site region 9266	662 bp downstream
Tssr9267	transcription start site region 9267	327 bp downstream
Tssr9268	transcription start site region 9268	257 bp downstream
Tssr9269	transcription start site region 9269	59 bp upstream
Tssr9270	transcription start site region 9270	99 bp upstream
Tssr9271	transcription start site region 9271	123 bp upstream
Tssr9272	transcription start site region 9272	153 bp upstream
Tssr9273	transcription start site region 9273	205 bp upstream
Tssr9274	transcription start site region 9274	223 bp upstream
Tssr9275	transcription start site region 9275	250 bp upstream
Tssr9276	transcription start site region 9276	265 bp upstream
Tssr9277	transcription start site region 9277	315 bp upstream
Tssr9278	transcription start site region 9278	336 bp upstream
Tssr9279	transcription start site region 9279	357 bp upstream
Tssr9280	transcription start site region 9280	374 bp upstream
Tssr9281	transcription start site region 9281	480 bp upstream
Tssr9282	transcription start site region 9282	515 bp upstream
Tssr9283	transcription start site region 9283	529 bp upstream
Tssr9284	transcription start site region 9284	544 bp upstream
Tssr9285	transcription start site region 9285	554 bp upstream
Tssr9286	transcription start site region 9286	638 bp upstream
Tssr9287	transcription start site region 9287	1151 bp upstream
Tssr9288	transcription start site region 9288	1267 bp upstream
Tssr9289	transcription start site region 9289	1284 bp upstream
Tssr9290	transcription start site region 9290	1440 bp upstream
Tssr9291	transcription start site region 9291	1486 bp upstream
Tssr9292	transcription start site region 9292	1605 bp upstream
Tssr9293	transcription start site region 9293	1634 bp upstream
Tssr9294	transcription start site region 9294	1654 bp upstream
Tssr9295	transcription start site region 9295	1670 bp upstream
Tssr9296	transcription start site region 9296	1692 bp upstream
Tssr9297	transcription start site region 9297	1701 bp upstream
Tssr9298	transcription start site region 9298	1727 bp upstream
Tssr9299	transcription start site region 9299	1749 bp upstream
Tssr9300	transcription start site region 9300	1766 bp upstream
Tssr9301	transcription start site region 9301	1900 bp upstream
Tssr9302	transcription start site region 9302	1930 bp upstream
Tssr9303	transcription start site region 9303	1992 bp upstream