rs244444975 SNP Detail

Summary

• ID
  rs244444975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44127767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT CTCCAATCTC CTCCATCTTT
  Y
  CCTCTTTCAT CTCATTGCCC TGCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322198927	CHEV_7_51733713	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244444975					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44127767 () rs orientation: forward

Symbol	Name	Function Class
Tssr2222	transcription start site region 2222	1989 bp downstream
Tssr2223	transcription start site region 2223	1810 bp downstream
Tssr2224	transcription start site region 2224	964 bp downstream
Tssr2225	transcription start site region 2225	924 bp downstream
Tssr2226	transcription start site region 2226	398 bp downstream
Tssr2227	transcription start site region 2227	668 bp upstream
Tssr2228	transcription start site region 2228	1735 bp upstream
Tssr66214	transcription start site region 66214	1971 bp downstream
Tssr66215	transcription start site region 66215	1941 bp downstream
Tssr66216	transcription start site region 66216	1894 bp downstream
Tssr66217	transcription start site region 66217	1822 bp downstream
Tssr66218	transcription start site region 66218	1768 bp downstream
Tssr66219	transcription start site region 66219	1726 bp downstream
Tssr66220	transcription start site region 66220	1692 bp downstream
Tssr66221	transcription start site region 66221	1673 bp downstream
Tssr66222	transcription start site region 66222	1620 bp downstream
Tssr66223	transcription start site region 66223	1553 bp downstream
Tssr66224	transcription start site region 66224	1530 bp downstream
Tssr66225	transcription start site region 66225	1510 bp downstream
Tssr66226	transcription start site region 66226	1497 bp downstream
Tssr66227	transcription start site region 66227	1456 bp downstream
Tssr66228	transcription start site region 66228	1453 bp downstream
Tssr66229	transcription start site region 66229	1440 bp downstream
Tssr66230	transcription start site region 66230	1420 bp downstream
Tssr66231	transcription start site region 66231	1385 bp downstream
Tssr66232	transcription start site region 66232	1373 bp downstream
Tssr66233	transcription start site region 66233	1351 bp downstream
Tssr66234	transcription start site region 66234	1321 bp downstream
Tssr66235	transcription start site region 66235	1301 bp downstream
Tssr66236	transcription start site region 66236	1274 bp downstream
Tssr66237	transcription start site region 66237	1253 bp downstream
Tssr66238	transcription start site region 66238	1234 bp downstream
Tssr66239	transcription start site region 66239	1183 bp downstream
Tssr66240	transcription start site region 66240	1102 bp downstream
Tssr66241	transcription start site region 66241	1090 bp downstream
Tssr66242	transcription start site region 66242	1010 bp downstream
Tssr66243	transcription start site region 66243	996 bp downstream
Tssr66244	transcription start site region 66244	945 bp downstream
Tssr66245	transcription start site region 66245	883 bp downstream
Tssr66246	transcription start site region 66246	855 bp downstream
Tssr66247	transcription start site region 66247	808 bp downstream
Tssr66248	transcription start site region 66248	767 bp downstream
Tssr66249	transcription start site region 66249	744 bp downstream
Tssr66250	transcription start site region 66250	725 bp downstream
Tssr66251	transcription start site region 66251	700 bp downstream
Tssr66252	transcription start site region 66252	669 bp downstream
Tssr66253	transcription start site region 66253	641 bp downstream
Tssr66254	transcription start site region 66254	593 bp downstream
Tssr66255	transcription start site region 66255	566 bp downstream
Tssr66256	transcription start site region 66256	517 bp downstream
Tssr66257	transcription start site region 66257	506 bp downstream
Tssr66258	transcription start site region 66258	463 bp downstream
Tssr66259	transcription start site region 66259	427 bp downstream
Tssr66260	transcription start site region 66260	320 bp downstream
Tssr66261	transcription start site region 66261	299 bp downstream
Tssr66262	transcription start site region 66262	292 bp downstream
Tssr66263	transcription start site region 66263	280 bp downstream
Tssr66264	transcription start site region 66264	256 bp downstream
Tssr66265	transcription start site region 66265	213 bp downstream
Tssr66266	transcription start site region 66266	196 bp downstream
Tssr66267	transcription start site region 66267	159 bp downstream
Tssr66268	transcription start site region 66268	143 bp downstream
Tssr66269	transcription start site region 66269	107 bp downstream
Tssr66270	transcription start site region 66270	72 bp downstream
Tssr66271	transcription start site region 66271	40 bp downstream
Tssr66272	transcription start site region 66272	5 bp upstream
Tssr66273	transcription start site region 66273	17 bp upstream
Tssr66274	transcription start site region 66274	32 bp upstream
Tssr66275	transcription start site region 66275	40 bp upstream
Tssr66276	transcription start site region 66276	69 bp upstream
Tssr66277	transcription start site region 66277	77 bp upstream
Tssr66278	transcription start site region 66278	109 bp upstream
Tssr66279	transcription start site region 66279	156 bp upstream
Tssr66280	transcription start site region 66280	195 bp upstream
Tssr66281	transcription start site region 66281	226 bp upstream
Tssr66282	transcription start site region 66282	252 bp upstream
Tssr66283	transcription start site region 66283	266 bp upstream
Tssr66284	transcription start site region 66284	283 bp upstream
Tssr66285	transcription start site region 66285	298 bp upstream
Tssr66286	transcription start site region 66286	335 bp upstream
Tssr66287	transcription start site region 66287	353 bp upstream
Tssr66288	transcription start site region 66288	389 bp upstream
Tssr66289	transcription start site region 66289	437 bp upstream
Tssr66290	transcription start site region 66290	498 bp upstream
Tssr66291	transcription start site region 66291	527 bp upstream
Tssr66292	transcription start site region 66292	565 bp upstream
Tssr66293	transcription start site region 66293	583 bp upstream
Tssr66294	transcription start site region 66294	604 bp upstream
Tssr66295	transcription start site region 66295	889 bp upstream
Tssr66296	transcription start site region 66296	1022 bp upstream
Tssr66297	transcription start site region 66297	1065 bp upstream
Tssr66298	transcription start site region 66298	1090 bp upstream
Tssr66299	transcription start site region 66299	1159 bp upstream
Tssr66300	transcription start site region 66300	1166 bp upstream
Tssr66301	transcription start site region 66301	1190 bp upstream
Tssr66302	transcription start site region 66302	1204 bp upstream
Tssr66303	transcription start site region 66303	1245 bp upstream
Tssr66304	transcription start site region 66304	1253 bp upstream
Tssr66305	transcription start site region 66305	1263 bp upstream
Tssr66306	transcription start site region 66306	1297 bp upstream
Tssr66307	transcription start site region 66307	1354 bp upstream
Tssr66308	transcription start site region 66308	1407 bp upstream
Tssr66309	transcription start site region 66309	1428 bp upstream
Tssr66310	transcription start site region 66310	1466 bp upstream
Tssr66311	transcription start site region 66311	1543 bp upstream
Tssr66312	transcription start site region 66312	1559 bp upstream
Tssr66313	transcription start site region 66313	1580 bp upstream
Tssr66314	transcription start site region 66314	1588 bp upstream
Tssr66315	transcription start site region 66315	1608 bp upstream
Tssr66316	transcription start site region 66316	1667 bp upstream
Tssr66317	transcription start site region 66317	1679 bp upstream
Tssr66318	transcription start site region 66318	1724 bp upstream
Tssr66319	transcription start site region 66319	1747 bp upstream
Tssr66320	transcription start site region 66320	1774 bp upstream
Tssr66321	transcription start site region 66321	1792 bp upstream
Tssr66322	transcription start site region 66322	1812 bp upstream
Tssr66323	transcription start site region 66323	1858 bp upstream
Tssr66324	transcription start site region 66324	1887 bp upstream
Tssr66325	transcription start site region 66325	1917 bp upstream
Tssr66326	transcription start site region 66326	1958 bp upstream
Tssr66327	transcription start site region 66327	1972 bp upstream
Tssr66328	transcription start site region 66328	1988 bp upstream
Tssr72199	transcription start site region 72199	860 bp upstream
Tssr72200	transcription start site region 72200	86 bp downstream
Tssr72201	transcription start site region 72201	587 bp downstream
Tssr72202	transcription start site region 72202	1450 bp downstream
Tssr72203	transcription start site region 72203	1836 bp downstream