rs244453492 SNP Detail

Summary

• ID
  rs244453492
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124715331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGACACGG CCACTGAGGA
  GTCCACACCA CAGAGGGTTT TTATGGCATA GGTGAGATTT GCTCTCAGGC CCTGGAGTGT
  TTCTCCTGCA ATGGTGAAGT GAGGAAGTGA TGTTCATTTA GCGTCACTGC CCTTGCCGGT
  CTGCGCTTCA CCCACTCTTT TTTTTTTTTT TTTTTGGTTT ATCGAGGCAG GGTTTCTCTG
  K
  GTAGTCCTGG CTGTCCTGGA ACTCACTTTG TCAACCAGGC TGGCCTCGAA CTCAGAAATC
  CACCTGCCTC TGCCTCCCGA GTGCTGGGAC TAAAGGCATG CGCCACCACG CCGGGCGCAT
  CCACTCTTTC AAAGAACACT GGCTGCTTCT CTGTGCCAGC CACTGCACGA GAGAGGGCCC
  TGCTCTCACG GAGCAATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366563033	MGP_WTSI_5_125027277	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244453492					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366563033	MGP_WTSI_5_125027277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124715331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	1416 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	1880 bp upstream
Rr399368	regulatory region 399368	1708 bp upstream
Rr620506	regulatory region 620506	1385 bp proximal
Rr620507	regulatory region 620507	1853 bp proximal
Rr620508	regulatory region 620508	1883 bp proximal
Tssr48907	transcription start site region 48907	1847 bp upstream
Tssr48908	transcription start site region 48908	1866 bp upstream
Tssr53375	transcription start site region 53375	1755 bp downstream
Tssr53376	transcription start site region 53376	1777 bp downstream
Tssr53377	transcription start site region 53377	1815 bp downstream