rs244459568 SNP Detail

Summary

• ID
  rs244459568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGCTGGCA CCTGCAGGAG
  AGTTCCTGGG CTGGGTGATG GCGCTGCCTC TAATTCCAGG GGTCCCAAGG GAACTGGCGA
  GCTGGCCAGG GCCTCCCCTG GGCTCCTGAA TTCCCAGATG AGAGGGATGT GAATACTGCC
  CTCCAATCAC CCGAAGAAAG TCCTCAGCCA CCTGCCCAGG GGCTAAGAGA CCCAGGCAGC
  R
  GGTGTGACTA CCCATATACA GAAGCATACT CCTGACTTCT CTCCCAAACC GCCACTGCCC
  CCAGACTGGA GGCTCAGCCT TGCCACTGAC TCTGTCACCC CGGGAAAGTC CTCCCTTCTT
  GGGCCTCACA GGTTCCAGCA GTCTGGAGGG TGTTGAGGCA GGTTCTTCAC CTCTTCTCTT
  CTCTCTCCCT CGTCAAGAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428885	MGP_WTSI_11_54721845	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244459568					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428885	MGP_WTSI_11_54721845	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799169 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Tssr3502	transcription start site region 3502	1298 bp downstream
Tssr3503	transcription start site region 3503	1772 bp upstream
Tssr101553	transcription start site region 101553	1562 bp downstream
Tssr101554	transcription start site region 101554	1550 bp downstream
Tssr101555	transcription start site region 101555	1508 bp downstream
Tssr101556	transcription start site region 101556	1213 bp downstream
Tssr101557	transcription start site region 101557	1183 bp downstream
Tssr101558	transcription start site region 101558	1166 bp downstream
Tssr101559	transcription start site region 101559	1143 bp downstream
Tssr101560	transcription start site region 101560	1097 bp downstream
Tssr101561	transcription start site region 101561	192 bp upstream
Tssr101562	transcription start site region 101562	216 bp upstream
Tssr101563	transcription start site region 101563	266 bp upstream
Tssr101564	transcription start site region 101564	280 bp upstream
Tssr101565	transcription start site region 101565	709 bp upstream
Tssr101566	transcription start site region 101566	759 bp upstream
Tssr101567	transcription start site region 101567	1120 bp upstream
Tssr101568	transcription start site region 101568	1196 bp upstream
Tssr101569	transcription start site region 101569	1279 bp upstream
Tssr101570	transcription start site region 101570	1301 bp upstream
Tssr101571	transcription start site region 101571	1355 bp upstream
Tssr101572	transcription start site region 101572	1450 bp upstream
Tssr101573	transcription start site region 101573	1487 bp upstream
Tssr101574	transcription start site region 101574	1501 bp upstream
Tssr101575	transcription start site region 101575	1549 bp upstream
Tssr101576	transcription start site region 101576	1563 bp upstream
Tssr101577	transcription start site region 101577	1592 bp upstream
Tssr101578	transcription start site region 101578	1675 bp upstream
Tssr108006	transcription start site region 108006	1058 bp upstream
Tssr108007	transcription start site region 108007	221 bp downstream
Tssr108008	transcription start site region 108008	281 bp downstream
Tssr108009	transcription start site region 108009	297 bp downstream
Tssr108010	transcription start site region 108010	718 bp downstream
Tssr108011	transcription start site region 108011	1314 bp downstream
Tssr108012	transcription start site region 108012	1348 bp downstream
Tssr108013	transcription start site region 108013	1442 bp downstream
Tssr108014	transcription start site region 108014	1449 bp downstream
Tssr108015	transcription start site region 108015	1532 bp downstream
Tssr108016	transcription start site region 108016	1584 bp downstream
Tssr108017	transcription start site region 108017	1635 bp downstream
Tssr108018	transcription start site region 108018	1650 bp downstream
Tssr108019	transcription start site region 108019	1686 bp downstream
Tssr108020	transcription start site region 108020	1742 bp downstream
Tssr108021	transcription start site region 108021	1762 bp downstream
Tssr108022	transcription start site region 108022	1773 bp downstream