rs244467559 SNP Detail

Summary

• ID
  rs244467559
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGTGCCTG GAACGTGCTT
  CTCCGGTGCT GCACCACGGA TCTATACCGC TACCCCACAC CCTTCTTCTT AACAGTATAT
  GCGTCACCGT TAGCAAAGTC TATCTCCCCT TCCTACATCG CCTCCTTACT CACAGTCCAA
  CAAACGATTT TTTTCCTGAG ACAAGATTTT AGTATGTACA TAGCCTAGGC TGGCAGTGAA
  M
  TTGCCATCCT GGTTCAACCT CTCAAGAGCT GGGTTTACCG GGTTTATTGG TGTGTGCCAC
  TCCTGCTATC AACAGACACT TTTGAAGGTC TCTTTATACC TGATCTTGTT CTTAGTTCTT
  TCTGTAGGAT AAGCAAAAAC ACAAACTGAA GCAAGTGCCT AGATGTCTGT AAAGCTTCCT
  AGCTCTTGAT CACCGTAAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535812	CHEV_10_128182701	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs244467559					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581514 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1422 bp distal
Dgka	diacylglycerol kinase, alpha	790 bp upstream
Gm31504	predicted gene, 31504	within coordinates
Gm66065	predicted gene, 66065	324 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1686 bp proximal
Rr385481	regulatory region 385481	1680 bp upstream
Rr402364	regulatory region 402364	696 bp downstream
Tssr96440	transcription start site region 96440	823 bp downstream
Tssr96441	transcription start site region 96441	622 bp downstream
Tssr96442	transcription start site region 96442	411 bp downstream
Tssr96443	transcription start site region 96443	812 bp upstream
Tssr99941	transcription start site region 99941	1800 bp upstream
Tssr99942	transcription start site region 99942	1735 bp upstream
Tssr99943	transcription start site region 99943	1673 bp upstream
Tssr99944	transcription start site region 99944	1650 bp upstream
Tssr99945	transcription start site region 99945	1560 bp upstream
Tssr99946	transcription start site region 99946	1536 bp upstream
Tssr99947	transcription start site region 99947	1393 bp upstream
Tssr99948	transcription start site region 99948	1363 bp upstream
Tssr99949	transcription start site region 99949	758 bp upstream
Tssr99950	transcription start site region 99950	587 bp upstream
Tssr99951	transcription start site region 99951	564 bp upstream
Tssr99952	transcription start site region 99952	560 bp upstream
Tssr99953	transcription start site region 99953	523 bp upstream
Tssr99954	transcription start site region 99954	179 bp upstream
Tssr99955	transcription start site region 99955	146 bp upstream
Tssr99956	transcription start site region 99956	588 bp downstream
Tssr99957	transcription start site region 99957	655 bp downstream
Tssr99958	transcription start site region 99958	1983 bp downstream