rs244472472 SNP Detail

Summary

• ID
  rs244472472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124144643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGGCACT GTAATCCCGG
  GTATGCAGAA ACCTGTCCCG AGCCCATGGC AGCAGCGAAA GGGGTGGCTA CGTGTCCTGC
  AGGCACCGGG GGTGGAGGGG GGGGAATACG CCGAGGCACG ACAGAAGGGA GCCCAGTGGC
  CTCCAGAGAG GGGTAGGGAA GGGCGGTGGC AGGTGAGGGC TCAGGCACCC TGGGTGGTGG
  Y
  GGGGCCCCGG CCTGCGGGTG TCTCTGTCCC TTCAGCACCA GCTCCTGGAG CTTCTCCACT
  TTCACACGGC GCATGTGCGC CAGCTTCCGC TTGCTCTGGT AGACATCAAT AAAGGAATCT
  AGAGGAAGCT CTCCATCCAG AAACTTCTCT GCCATGTTCT ACAAGAGGCA GGAGAAAGCA
  GGTTATAAGA TAGGCCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366551294	MGP_WTSI_5_124456589	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244472472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366551294	MGP_WTSI_5_124456589	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124144643 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	429 bp downstream
Rr620321	regulatory region 620321	1152 bp distal
Rr620322	regulatory region 620322	491 bp distal
Tssr48832	transcription start site region 48832	1572 bp downstream
Tssr48833	transcription start site region 48833	90 bp downstream
Tssr53284	transcription start site region 53284	932 bp upstream
Tssr53285	transcription start site region 53285	426 bp upstream
Tssr53286	transcription start site region 53286	86 bp upstream
Tssr53287	transcription start site region 53287	11 bp upstream
Vps37b	vacuolar protein sorting 37B	within coordinates