rs244474804 SNP Detail

Summary

• ID
  rs244474804
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGACAAAA TTGAGCCCCT
  ACCCCCGCAA ATACCCTACA TTTGTTAGTT GACAGAAAAT AAATATAGAT TTTTGTACTA
  AATGTGCACA TATGGTTATC TTGATTTATG TTTCACATTT AAAAAAAAAT CATTTTGATG
  ACAAAGCGAC AAAGTGGAAT CCCTGTTTCG GCGGACTTAA CTAAAAATGG GCAGCTTGGG
  Y
  CGTGTCTGTT TCTATTCCGG GAGGCAGAGC TGACGGGCCC CAACAGATGC AGCCCTTGGA
  ATGCATCAGG GACAGGGAGC GGGCACAGCT GATTCTCACC CTTAGCCAGT AGTCCTGTGG
  GATCCCAGTC CTGGGCCATG ACAGTGATGC TTCAGCACAC GTGCGCACTC AGGGTGGTGG
  GCAGTGGGAA GAGCGCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138887	MGP_WTSI_9_77485275	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs244474804					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138887	MGP_WTSI_9_77485275	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544750 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	641 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	958 bp distal
Rr683390	regulatory region 683390	652 bp distal
Rr683391	regulatory region 683391	465 bp distal
Rr683392	regulatory region 683392	within coordinates
Tssr86194	transcription start site region 86194	988 bp downstream
Tssr86195	transcription start site region 86195	940 bp downstream
Tssr86196	transcription start site region 86196	921 bp downstream
Tssr86197	transcription start site region 86197	858 bp downstream
Tssr86198	transcription start site region 86198	848 bp downstream
Tssr86199	transcription start site region 86199	833 bp downstream
Tssr86200	transcription start site region 86200	757 bp downstream
Tssr86201	transcription start site region 86201	736 bp downstream